View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590_low_12 (Length: 303)
Name: NF5590_low_12
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 8047636 - 8047348
Alignment:
| Q |
1 |
tgcgtaaggtcaatgttggtgcgtcaatgttagccaagctagcatgtttgaccttccaattggtgtctaattctcttcaagtagaatttcttgtactgtg |
100 |
Q |
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| T |
8047636 |
tgcgtaaggtcaatgttggtgcgtcaatgttagccaagctagcatgtttgaccttccaattggtgtctaattctcttcaagtagaatttcttgtactgtg |
8047537 |
T |
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| Q |
101 |
cacaaaaatacaactcannnnnnnnnnnnnn-acaaataatattcggtccaattttcacctactaacaaagcattgatgtcatcaattccttttgtaatt |
199 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8047536 |
cacaaaaatacaactcatttttttgtttttttacacataatattcggtccaattttcacctactaacaaagcattgatgtcatcaattccttttataatt |
8047437 |
T |
|
| Q |
200 |
tacacaaacatgaaagtagttggagtttgattcccctgctctaatccacatagataatgtttttgaatgcaagtagcagttttgttatt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8047436 |
tacacaaacatgaaagtagttggagtttgattcccctgctctaatccacatagataatgtttttgaatgcaagtagcagttttgttatt |
8047348 |
T |
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