View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590_low_2 (Length: 431)
Name: NF5590_low_2
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 69 - 425
Target Start/End: Complemental strand, 33235020 - 33234664
Alignment:
| Q |
69 |
aagacatagagagtgacacaacagaaccgaccactctagtttgttcaagtataagaacaaaattatggcttgatttgaatnnnnnnnttgactgattgaa |
168 |
Q |
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| T |
33235020 |
aagacatagagagtgacacaacagaaccgaccactctagtttgttcaagtataagaacaaaattatggcttgatttgaataaaaaaattgactgattgaa |
33234921 |
T |
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| Q |
169 |
gtgtctgaaaatatagaaaggacatgagagttaaataattgacaatgtaaatgtcttaagttccttgctttctttgactttacatatatgtctacgtata |
268 |
Q |
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| T |
33234920 |
gtgtctgaaaatatagaaaggacatgagagttaaataattgacaatgtaaatgtcttaagttccttgctttctttgactttacatatatgtgtacgtata |
33234821 |
T |
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| Q |
269 |
tatttgtgtgtatttagtattttacatgtcctggtcaccctacaggtggacaaataatgtacatacatattgtatatggaggtgaatctatttcatatat |
368 |
Q |
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| T |
33234820 |
tatttgtgtgtatttagtattttacatgtcctggtcaccctacaggtggacaaataatgtacatacatattgtatatggaggtgaatctatttcatatat |
33234721 |
T |
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| Q |
369 |
attcaataattaatatatagatttgttgggctgtctcagtcctgctagaataatcta |
425 |
Q |
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| T |
33234720 |
attcaataattaatatatagatttgttgggctgtctcagtcctgctagaatattcta |
33234664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 33235068 - 33235035
Alignment:
| Q |
19 |
ataattcaagaaataaattactttggcctttgtt |
52 |
Q |
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| T |
33235068 |
ataattcaagaaataaattactttggcctttgtt |
33235035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 10539171 - 10539103
Alignment:
| Q |
341 |
tatatggaggtgaatctatttcatatatattcaataattaatatatagatttgttgggctgtctcagtc |
409 |
Q |
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| T |
10539171 |
tatatggaggtgaagctatttcatatatattcaatgattaatatatagatcagttgggctgtctcagtc |
10539103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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