View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5590_low_3 (Length: 423)

Name: NF5590_low_3
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5590_low_3
NF5590_low_3
[»] chr4 (5 HSPs)
chr4 (19-356)||(25034554-25034890)
chr4 (84-235)||(11899390-11899541)
chr4 (251-307)||(25028086-25028142)
chr4 (157-213)||(25027992-25028047)
chr4 (356-392)||(25034476-25034512)
[»] chr3 (2 HSPs)
chr3 (108-233)||(33818384-33818509)
chr3 (84-305)||(9008800-9009018)
[»] scaffold0002 (1 HSPs)
scaffold0002 (84-232)||(483615-483766)
[»] chr2 (1 HSPs)
chr2 (84-233)||(7688186-7688341)
[»] chr1 (2 HSPs)
chr1 (84-233)||(6191818-6191971)
chr1 (148-233)||(21873016-21873100)
[»] scaffold0057 (1 HSPs)
scaffold0057 (84-233)||(78157-78308)
[»] chr5 (1 HSPs)
chr5 (148-233)||(33259991-33260077)
[»] chr7 (1 HSPs)
chr7 (174-233)||(16435193-16435252)
[»] chr6 (1 HSPs)
chr6 (175-214)||(2947311-2947350)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 25034890 - 25034554
Alignment:
Q  19 aaatatgtgtatttcacatcagtcctcaaaaccgcaat-gtgaaatcaannnnnnnnnnnnnnnaaaaatggctttacaaataagtttgacacctgcact 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||                ||| |||||||||||||||||||||||||||||||    
T  25034890 aaatatgtgtatttcacatcagtcctcaaaaccgcaattgtgaaatcaatttttttattttttttaaa-tggctttacaaataagtttgacacctgcact 25034792  T
Q  118 tttcttttatattaatagaatgaaattaaatatggataattttcatgccaaaaaggaagttatattatctaatttgacattacataatcaatcctctgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25034791 tttcttttatattaatagaatgaaattaaatatggataattttcatgccaaaaaggaagttatattatctaatttgacattacataatcaatcctctgct 25034692  T
Q  218 ttccacatcaatattcaattatnnnnnnnnnnnggcatatgaatacaatatagctaggaatgttccaataaaatatctttgggcagaatannnnnnnnaa 317  Q
    |||||||||||||||||| |||           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||    
T  25034691 ttccacatcaatattcaaatat-atataaaaaaggcatatgaatacaatatagctaggaatgttccaataaaacatctttgggcagaatatttttaaaaa 25034593  T
Q  318 aaattcaacaacataat-atcattgtaaatatgcttcata 356  Q
    ||| ||||||||| ||| ||||||||||||||||||||||    
T  25034592 aaa-tcaacaacagaatcatcattgtaaatatgcttcata 25034554  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 11899541 - 11899390
Alignment:
Q  84 aaatggctttacaaataagtttgacacctgcacttttcttttatattaatagaatgaaattaaatatggataattttcatgccaaaaaggaagttatatt 183  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  11899541 aaatggctttacaaataagtttgacacgtgctcttttcttttatgttaataaaatgaaaacaaatatggataattttcatgccaaaaaggaagttatatt 11899442  T
Q  184 atctaatttgacattacataatcaatcctctgctttccacatcaatattcaa 235  Q
    ||||||||||| ||||||||||||| | ||  ||||| ||||||||||||||    
T  11899441 atctaatttgatattacataatcaaccatcaactttcaacatcaatattcaa 11899390  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 25028086 - 25028142
Alignment:
Q  251 ggcatatgaatacaatatagctaggaatgttccaataaaatatctttgggcagaata 307  Q
    |||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  25028086 ggcatatggatacaatatagctaggaatattccaataaaacatctttgggtagaata 25028142  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 25027992 - 25028047
Alignment:
Q  157 ttttcatgccaaaaaggaagttatattatctaatttgacattacataatcaatcctc 213  Q
    ||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  25027992 ttttcattccaaaagggaagttatattat-taatttgatattacataatcaatcctc 25028047  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 25034512 - 25034476
Alignment:
Q  356 agccataaacattgacaatatcatttcatctcagcca 392  Q
    |||||||||||| ||||||||||||||||||||||||    
T  25034512 agccataaacatcgacaatatcatttcatctcagcca 25034476  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 33818509 - 33818384
Alignment:
Q  108 cacctgcacttttcttttatattaatagaatgaaattaaatatggataattttcatgccaaaaaggaagttatattatctaatttgacattacataatca 207  Q
    ||||||| |||||||||||||||  || |||||||  |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  33818509 cacctgctcttttcttttatatttgtaaaatgaaaacaaatatggataattttaatgccaaaaaagaagttatattatctaatttgatattacataatca 33818410  T
Q  208 atcctctgctttccacatcaatattc 233  Q
    ||||||  |||| |||||||||||||    
T  33818409 atcctcaacttttcacatcaatattc 33818384  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 305
Target Start/End: Original strand, 9008800 - 9009018
Alignment:
Q  84 aaatggctttacaaataagtttgacacctgcacttttcttttatattaatagaatgaaattaaa-tatggataattttcatgccaaaaaggaagttatat 182  Q
    |||||||||  |||||||| ||||||| ||| ||||||||||||||||||| |||||||  ||| |||| |||||||| ||||||||||  |||||||||    
T  9008800 aaatggcttatcaaataagcttgacacatgctcttttcttttatattaataaaatgaaaacaaattatgaataattttaatgccaaaaa-aaagttatat 9008898  T
Q  183 tatctaatttgacattacataatcaatcctctgctttccacatcaatattcaattatnnnnnnnnnnnggcatatgaatacaatatagctaggaatgttc 282  Q
    ||||||||| || ||||||||||||||||||   ||||||  ||||||||| | | |           | |||||||||||||||||||||||||| |||    
T  9008899 tatctaattggatattacataatcaatcctcaattttccatgtcaatattctaatct---ataaaagagtcatatgaatacaatatagctaggaatattc 9008995  T
Q  283 caataaaatatctttgggcagaa 305  Q
    |||||||| | |||| |||||||    
T  9008996 caataaaacaactttaggcagaa 9009018  T

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Target: scaffold0002 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 483615 - 483766
Alignment:
Q  84 aaatggctttacaaataagtttgacacctgcacttt--tcttttatattaatagaatgaaattaaat-atggataattttcatgccaaaaaggaagttat 180  Q
    |||||||||  |||||||| ||||||||||| ||||  | |||| || ||| | |||||||  |||| |||||||||||| |||| |||||  |||||||    
T  483615 aaatggcttatcaaataagcttgacacctgctctttatttttttttagtaacaaaatgaaaacaaattatggataattttaatgcaaaaaaaaaagttat 483714  T
Q  181 attatctaatttgacattacataatcaatcctctgctttccacatcaatatt 232  Q
    ||||||||||| || |||||||||||||||||||  |||||||  |||||||    
T  483715 attatctaattggatattacataatcaatcctctattttccacgccaatatt 483766  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 7688186 - 7688341
Alignment:
Q  84 aaatggctttacaaataagtttgacacctgcacttt--tcttttatattaatagaatgaaattaaat-atggataattttcatgccaaaaaggaag---t 177  Q
    |||||||||  |||||||| ||||||||||| ||||  | |||| || ||| | |||||||  |||| |||||||||||| |||| ||||| ||||   |    
T  7688186 aaatggcttatcaaataagcttgacacctgctctttatttttttttagtaacaaaatgaaaacaaattatggataattttaatgcaaaaaaagaagaagt 7688285  T
Q  178 tatattatctaatttgacattacataatcaatcctctgctttccacatcaatattc 233  Q
    |||||||||||||| || |||||||||||||||||||  |||||||  ||||||||    
T  7688286 tatattatctaattggatattacataatcaatcctctattttccacgccaatattc 7688341  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 6191971 - 6191818
Alignment:
Q  84 aaatggctttacaaataagtttgacacctgcacttt--tcttttatattaatagaatgaaattaaat-atggataattttcatgccaaaaaggaa-gtta 179  Q
    |||||||||  |||||||| ||||||||||| ||||  | |||| || ||| | |||||||  |||| |||||||||||| |||| |||||  || ||||    
T  6191971 aaatggcttatcaaataagcttgacacctgctctttatttttttttagtaacaaaatgaaaacaaattatggataattttaatgcaaaaaaaaaaagtta 6191872  T
Q  180 tattatctaatttgacattacataatcaatcctctgctttccacatcaatattc 233  Q
    |||||||||||| || |||||||||||||||||||  |||||||  ||||||||    
T  6191871 tattatctaattggatattacataatcaatcctctattttccacgccaatattc 6191818  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 21873016 - 21873100
Alignment:
Q  148 tatggataattttcatgccaaaaaggaagttatattatctaatttgacattacataatcaatcctctgctttccacatcaatattc 233  Q
    ||||||||||||| |||| |||||  |||||||||||| ||||| || |||||||||||||||||||  |||||||  ||||||||    
T  21873016 tatggataatttttatgcaaaaaaa-aagttatattatataattggatattacataatcaatcctctattttccacgccaatattc 21873100  T

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Target: scaffold0057 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 78157 - 78308
Alignment:
Q  84 aaatggctttacaaataagtttgacacctgcacttt--tcttttatattaatagaatgaaattaaat-atggataattttcatgccaaaaaggaagttat 180  Q
    |||||||||  |||||||| ||||||||||| ||||  | |||| || ||| | |||||||  |||| |||||||||||| |||| |||||  || ||||    
T  78157 aaatggcttatcaaataagcttgacacctgctctttatttttttttagtaacaaaatgaaaacaaattatggataattttaatgcaaaaaaaaaa-ttat 78255  T
Q  181 attatctaatttgacattacataatcaatcctctgctttccacatcaatattc 233  Q
    ||||||||||| || |||||||||||||||||||  |||||||  ||||||||    
T  78256 attatctaattggatattacataatcaatcctctattttccacgccaatattc 78308  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 33259991 - 33260077
Alignment:
Q  148 tatggataattttcatgccaaaaaggaa-gttatattatctaatttgacattacataatcaatcctctgctttccacatcaatattc 233  Q
    ||||||||||||| |||| |||||  || |||||||||| ||||| || |||||||||||||||||||  |||||||  ||||||||    
T  33259991 tatggataatttttatgcaaaaaaaaaaagttatattatataattggatattacataatcaatcctctattttccacgccaatattc 33260077  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 16435252 - 16435193
Alignment:
Q  174 aagttatattatctaatttgacattacataatcaatcctctgctttccacatcaatattc 233  Q
    |||||||||||| ||||| || |||||||||||||||||||  |||||||  ||||||||    
T  16435252 aagttatattatataattggatattacataatcaatcctctattttccacgccaatattc 16435193  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 2947311 - 2947350
Alignment:
Q  175 agttatattatctaatttgacattacataatcaatcctct 214  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  2947311 agttatattatctaattggatattacataatcaatcctct 2947350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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