View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590_low_5 (Length: 395)
Name: NF5590_low_5
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 7260291 - 7260651
Alignment:
| Q |
18 |
aaggtcacatcactgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgca |
117 |
Q |
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| T |
7260291 |
aaggtcacatcactgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgca |
7260390 |
T |
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| Q |
118 |
ttttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctggacttcagattcttgattttgcactttttgcaagt |
217 |
Q |
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| T |
7260391 |
ttttcaagctactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctggacttcagattcttgattttgcactttttgcaagt |
7260490 |
T |
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| Q |
218 |
aacttctctactcctttgatcactaagaccactttccttgatcctgttcttgtcaagaagcttaagagtattcttggtggcagtggttaagtaactatat |
317 |
Q |
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| T |
7260491 |
aacttctctactcctttgatcactaagaccactttccttgatcctgttcttgtcaagaagcttaagagtattcttggtggcagtggttaagtaactatat |
7260590 |
T |
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| Q |
318 |
acgtgttccgacctcaaaccacatttccgaggtatcgtctggtttgaggtattgtgtaagt |
378 |
Q |
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| T |
7260591 |
atgtgttccgacctcaagtcacatttccgaggtatcttctggtttgaggtactgtgtaagt |
7260651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 7271025 - 7271066
Alignment:
| Q |
83 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaa |
124 |
Q |
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| T |
7271025 |
ggtgatcttatggtttttccacaagggatgttgcattttcaa |
7271066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 7287283 - 7287383
Alignment:
| Q |
83 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctg |
182 |
Q |
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| T |
7287283 |
ggtgatcttatggtttttccccaagggatgttgcattttcaagttaattctggtaagggaaaagctactgcttttcttacttttagtagtgcaaatcctg |
7287382 |
T |
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| Q |
183 |
g |
183 |
Q |
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| T |
7287383 |
g |
7287383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 18245901 - 18245990
Alignment:
| Q |
31 |
tgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattt |
120 |
Q |
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| T |
18245901 |
tgctggttttgtttcctctgccaacactgtttacattaaaacactttacaaaggtgatgttatggtttttccacaaggattgttgcattt |
18245990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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