View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590_low_7 (Length: 389)
Name: NF5590_low_7
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 5 - 389
Target Start/End: Complemental strand, 8827706 - 8827322
Alignment:
| Q |
5 |
atgaacagaataaggtgtatgcaggatcagaaaagaaaagaaaatagggaatcctaacagaataggagcccagtgataaagagaatcataggtcttatct |
104 |
Q |
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| T |
8827706 |
atgaacagaataaggtgtatgcaggatcagaaaagaaaagaaaatagggaatcctaacagaataggagcccagtgataaagagaaccataggtcttatct |
8827607 |
T |
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| Q |
105 |
aaatccttgttatttaaactcatgtatcaaactatcaacagagcaaccaagatatatcaatgtgctgaaagatttgtttttgtggaatttgacttaagaa |
204 |
Q |
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| T |
8827606 |
aaatccttgttatttaaactcatgtatcaaactatcaacagatcaaccaaggtatatcaatgtgctgaaatatttgtttttgtggaatttgacttaagaa |
8827507 |
T |
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| Q |
205 |
tgaaacaaactttgcagatagatggctttgagcaggataagaaagtggttgtcattgctgccacaaatagaaaggaggaccttgatcctgcattaattag |
304 |
Q |
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| T |
8827506 |
tgaaacaaactttgcagatagatggctttgagcaggataagaaagtggttgtcattgctgccacaaatagaaaggaggaccttgatcctgcattaattag |
8827407 |
T |
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| Q |
305 |
gtgagcttaagaaaaattgctctatagcttacaaatttacataattgttcatgcaggagccaagaatattaacctagctgtcttt |
389 |
Q |
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| T |
8827406 |
gtgagtttaagaaaaattgctctatagcttacaaatttacataattgttcatgcaggagccaagaatattaacctagctgtcttt |
8827322 |
T |
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