View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590_low_8 (Length: 351)
Name: NF5590_low_8
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 134 - 333
Target Start/End: Complemental strand, 41999813 - 41999613
Alignment:
| Q |
134 |
taaattatataaatggagtgttgaaaatgttcaa-catattcaaatgcaatgttgtagagacaccattgaaagctaaaattcgattggtaagtagattta |
232 |
Q |
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| T |
41999813 |
taaattatataaatggagtgttgaaaatgttcaaacacattcaaatgcaatgttgtagagacaccattggaagctaaaattcgattggtaagtagattta |
41999714 |
T |
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| Q |
233 |
ttgaaagtccttgccaagaggattctaagatatctcaaaggaatgtagcatctaatttaatttggtgtgctaatttattcgtttgtttatgatctttaga |
332 |
Q |
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| T |
41999713 |
ttgaaagtccttgccaagaggattctaagatatctcaaaggaatgtagcatctaatttaatttggtgtgctaatttattcgtttgtttatgatctttaga |
41999614 |
T |
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| Q |
333 |
g |
333 |
Q |
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| T |
41999613 |
g |
41999613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 42000139 - 41999998
Alignment:
| Q |
1 |
tgtccagtggcaacttacaaagggtttgtccaaactaaattgaagtgtttgctccggtagttaaaattgagacaattagtttagtgattgcaattgtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42000139 |
tgtccagtggcaacttacaaagggtttgtccaaactaaattgaagtgtttgctccggtagttaaaattgagacaattaatttagtgattgcaattgtaaa |
42000040 |
T |
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| Q |
101 |
cttcaaggctttgtttgcgagtttggagacaattaaattata |
142 |
Q |
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| T |
42000039 |
ttttaaggttttgtttgcgagtttggaaacaattaaattata |
41999998 |
T |
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