View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5591_high_11 (Length: 288)
Name: NF5591_high_11
Description: NF5591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5591_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 270
Target Start/End: Original strand, 10224974 - 10225204
Alignment:
| Q |
41 |
ttaaaatatactgaaatttacacataactttgcagtttcaaacttgtgatagtcgttaattgcatataaaagtattatgaagaactctagtttaaattcc |
140 |
Q |
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| T |
10224974 |
ttaaaatatactgaaatttacacataactttgcagtttcaaacttgtgatagtctttaattgcatataaaagtattatgaagaactctagtttaaattcc |
10225073 |
T |
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| Q |
141 |
attatatagagtaaacgtgcagatgaatgtgaatctgattttagg-nnnnnnnnntgttgatggcatgataaaatcattgatggtaaaggatattaattc |
239 |
Q |
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| T |
10225074 |
attatatagagtaaacgtgcagatgaatgtgaatctgattttaggaaaaaaaaaatgttgatggcatgataaaatcattgatggtaaaggatattaattc |
10225173 |
T |
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| Q |
240 |
aaaaacagtatgttttatcttccaagtaaaa |
270 |
Q |
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| T |
10225174 |
aaaaacagtatgttttatcttccaagtaaaa |
10225204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 10243730 - 10243856
Alignment:
| Q |
55 |
aatttacacataactttgcagtttcaaacttgtgatagtcgttaattgcatataaaagtattatgaagaactctagtttaaattccattatatagagtaa |
154 |
Q |
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| T |
10243730 |
aatttacacatacttttgtagtttcaaacttgtgatagtctttaattgaatataaaagtattatgaagaactcttgtttaaattccattctagagagtaa |
10243829 |
T |
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| Q |
155 |
acgtgcagatgaatgtgaatctgattt |
181 |
Q |
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| T |
10243830 |
acgtgcagatgaatgtgaaactgattt |
10243856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 10224926 - 10224955
Alignment:
| Q |
16 |
actaagtaggttgtacatacacatgttaaa |
45 |
Q |
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| T |
10224926 |
actaagtaggttgtacatacacatgttaaa |
10224955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 10243664 - 10243693
Alignment:
| Q |
16 |
actaagtaggttgtacatacacatgttaaa |
45 |
Q |
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| T |
10243664 |
actaagtaggttgtacatacacatgttaaa |
10243693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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