View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5591_high_3 (Length: 386)

Name: NF5591_high_3
Description: NF5591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5591_high_3
NF5591_high_3
[»] chr3 (5 HSPs)
chr3 (294-378)||(23560765-23560849)
chr3 (294-378)||(12061040-12061124)
chr3 (184-245)||(23560655-23560716)
chr3 (297-378)||(48866585-48866667)
chr3 (296-365)||(48866644-48866714)
[»] chr6 (6 HSPs)
chr6 (294-378)||(14326546-14326630)
chr6 (294-378)||(14419556-14419640)
chr6 (294-364)||(21283345-21283415)
chr6 (295-378)||(16269374-16269457)
chr6 (184-245)||(14326657-14326718)
chr6 (184-245)||(14419667-14419728)
[»] chr8 (6 HSPs)
chr8 (295-376)||(13366123-13366204)
chr8 (294-378)||(8096183-8096267)
chr8 (294-378)||(39567667-39567751)
chr8 (294-378)||(45377722-45377806)
chr8 (294-365)||(39270195-39270266)
chr8 (197-245)||(13366254-13366302)
[»] chr7 (3 HSPs)
chr7 (294-378)||(21709951-21710035)
chr7 (296-378)||(26025518-26025600)
chr7 (296-361)||(33458702-33458767)
[»] chr1 (4 HSPs)
chr1 (294-378)||(16962783-16962867)
chr1 (297-378)||(2972115-2972196)
chr1 (296-378)||(51598589-51598671)
chr1 (294-378)||(40812237-40812321)
[»] chr4 (6 HSPs)
chr4 (296-378)||(756847-756929)
chr4 (294-378)||(35055945-35056029)
chr4 (294-378)||(16038860-16038944)
chr4 (296-378)||(702273-702355)
chr4 (296-378)||(770572-770654)
chr4 (296-378)||(40145392-40145474)
[»] scaffold0122 (2 HSPs)
scaffold0122 (302-378)||(16867-16943)
scaffold0122 (197-245)||(16762-16810)
[»] scaffold0031 (1 HSPs)
scaffold0031 (296-378)||(123782-123864)
[»] chr2 (2 HSPs)
chr2 (294-375)||(14510153-14510234)
chr2 (197-245)||(14510056-14510104)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 23560765 - 23560849
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  23560765 gggtttggattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatactaatgatg 23560849  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 12061124 - 12061040
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||    
T  12061124 gggtttagattgggatttggaagagtttagattagatccaaaaatggatttagattagaatatgaaaggattgatgttgatgatg 12061040  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 23560655 - 23560716
Alignment:
Q  184 caaatctgattcccaaatctgattctcatttttccctttcaatccggtctaaatcagctccc 245  Q
    |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23560655 caaatctgctccccaaatctgattctcatttttcccttttaatccggtctaaatcagctccc 23560716  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 48866667 - 48866585
Alignment:
Q  297 tttagattggaatttgaaagtgtttagattagatccaaaaatggg-tttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||| ||| |||||||||| || |||||||||    
T  48866667 tttagattgaaatttgaaaggatttagattagatccaaaaatgggttttagattgaaatttgaaaggattgatgttgatgatg 48866585  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 48866714 - 48866644
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatggg-tttagattggaatatgaaaggatt 365  Q
    ||||| |||| |||||| ||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  48866714 gtttaaattgaaatttggaagggtttagattagatccaaaaatgggttttagattgaaatttgaaaggatt 48866644  T

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Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 14326630 - 14326546
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  14326630 gggtttagattgggatttggaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatg 14326546  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 14419640 - 14419556
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  14419640 gggtttagattgggatttggaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatg 14419556  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 21283415 - 21283345
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggat 364  Q
    ||||||||||||| ||||| |||  |||||||||||||||||| ||||||||||||||||| |||||||||    
T  21283415 gggtttagattgggatttggaagaatttagattagatccaaaattgggtttagattggaatttgaaaggat 21283345  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 16269374 - 16269457
Alignment:
Q  295 ggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||  ||||| |||||||| |||||||||| || | |||||||    
T  16269374 ggtttagattggaatttgtaagggtttagattagatctaaaaatttgtttatattggaatttgaaaggattgatgtagatgatg 16269457  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 14326718 - 14326657
Alignment:
Q  184 caaatctgattcccaaatctgattctcatttttccctttcaatccggtctaaatcagctccc 245  Q
    |||||||| | ||||||||||||||  |||||||||||| ||||||||| ||||| ||||||    
T  14326718 caaatctgctccccaaatctgattccgatttttcccttttaatccggtccaaatccgctccc 14326657  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 14419728 - 14419667
Alignment:
Q  184 caaatctgattcccaaatctgattctcatttttccctttcaatccggtctaaatcagctccc 245  Q
    |||||||| | ||||||||||||||  |||||||||||| ||||||||| ||||| ||||||    
T  14419728 caaatctgctccccaaatctgattccgatttttcccttttaatccggtccaaatccgctccc 14419667  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 13366204 - 13366123
Alignment:
Q  295 ggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatga 376  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||    
T  13366204 ggtttagattggaatttggaagggtttagattagatccaaaaatgagtttagattggaatatgaaaggattgatgttgatga 13366123  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 8096183 - 8096267
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||    
T  8096183 gggtttagattgggatttggaagagtttagattagatccaaaaatggatttagattggaatatgaaaggattgatgttgatgatg 8096267  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 39567667 - 39567751
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  39567667 gggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgatattgatgatg 39567751  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 45377722 - 45377806
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    |||||| |||||| |||||||||  |||| |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  45377722 gggtttggattgggatttgaaagaatttaaattagatccaaaaatgagtttagattggaatttgaaaggattgatattgatgatg 45377806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 39270266 - 39270195
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggatt 365  Q
    ||||||||||||| ||||| |||  |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  39270266 gggtttagattgggatttggaagaatttagattagattcaaaaatgagtttagattggaatttgaaaggatt 39270195  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 13366302 - 13366254
Alignment:
Q  197 caaatctgattctcatttttccctttcaatccggtctaaatcagctccc 245  Q
    ||||||||| || ||||||||||||| ||||||||| ||||| ||||||    
T  13366302 caaatctgactcccatttttcccttttaatccggtccaaatctgctccc 13366254  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 21710035 - 21709951
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  21710035 gggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatg 21709951  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 26025518 - 26025600
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  26025518 gtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatg 26025600  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 33458767 - 33458702
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaag 361  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33458767 gtttaaattggaatttggaagagtttagattagatccaaaaatgggtttagattggaatttgaaag 33458702  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 16962867 - 16962783
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  16962867 gggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattgaaatttgaaaggattgatattgatgatg 16962783  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 2972196 - 2972115
Alignment:
Q  297 tttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||| || |||||||||    
T  2972196 tttatattggaatttggaagggtttagattagatccaaaaatgggtttagattggactttgaaaggattgatgttgatgatg 2972115  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 51598589 - 51598671
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||| ||||||||||||| ||||||||||  |||||||||||    
T  51598589 gtttagattgggatttggaagaatttagattagatccaaaaatggatttagattggaatttgaaaggattgctattgatgatg 51598671  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 40812237 - 40812321
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||| ||||| ||||| |||  |||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||    
T  40812237 gggtttaaattgggatttggaaggatttagattagatccaaaaataggtttagattggaatgtgaaaggattgatgttgatgatg 40812321  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 756929 - 756847
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  756929 gtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatg 756847  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 35055945 - 35056029
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||||    
T  35055945 gggtttagattgggatttggaagaatttagattagatccaaaaataggtttagattagaatttgaaaggattgatattgatgatg 35056029  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 16038860 - 16038944
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||| |||||||||| |||| |||||||||| ||||||| ||||    
T  16038860 gggtttagattgggatttggaagaatttagattagatccaaaaatcggtttagatttgaatttgaaaggattgatattgacgatg 16038944  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 702273 - 702355
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||| | ||||| |||  ||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||    
T  702273 gtttagattaggatttggaagaatttagattagatccaaaaatgagtttagattggaatttgaaaggattgctattgatgatg 702355  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 770572 - 770654
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||| | ||||| |||  ||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||    
T  770572 gtttagattaggatttggaagaatttagattagatccaaaaatgagtttagattggaatttgaaaggattgctattgatgatg 770654  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 40145392 - 40145474
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||| ||||||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||||||| ||  ||||||||    
T  40145392 gtttaaattggaatttggaagagtttaaattagatccataaatgggtttagattggaatttgaaaggattgatgctgatgatg 40145474  T

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Target: scaffold0122 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 378
Target Start/End: Original strand, 16867 - 16943
Alignment:
Q  302 attggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||| ||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  16867 attgggatttggaagggtttagattacatccaaaaatgagtttagattggaatatgaaaggattgatattgatgatg 16943  T

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Target: scaffold0122; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 16762 - 16810
Alignment:
Q  197 caaatctgattctcatttttccctttcaatccggtctaaatcagctccc 245  Q
    |||||||||||| ||||||||||||| ||||||||  ||||| ||||||    
T  16762 caaatctgattcccatttttcccttttaatccggttcaaatctgctccc 16810  T

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Target: scaffold0031 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 123864 - 123782
Alignment:
Q  296 gtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatgatg 378  Q
    ||||||||||| ||||| |||  |||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  123864 gtttagattgggatttggaagaatttagattagattcaaaaatgggtttagattggaatttgaaaggattgctattgatgatg 123782  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 14510153 - 14510234
Alignment:
Q  294 gggtttagattggaatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatattgatg 375  Q
    ||||||||||||| | ||| |||  ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  14510153 gggtttagattgggagttggaaggatttagattagatccaaaaatgagtttagattggaatatgaaaggattgatgttgatg 14510234  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 14510056 - 14510104
Alignment:
Q  197 caaatctgattctcatttttccctttcaatccggtctaaatcagctccc 245  Q
    |||||||||||| ||||||||||||| |||| |||| ||||| ||||||    
T  14510056 caaatctgattcccatttttcccttttaatctggtccaaatctgctccc 14510104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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