View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5591_low_1 (Length: 581)
Name: NF5591_low_1
Description: NF5591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5591_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 46768911 - 46768338
Alignment:
| Q |
1 |
cgcacatggtagtaaattatttgacttcagtaaactgagtcatttccnnnnnnngga-ggtaattttacaacttttatatttaaacactcttaaatttcc |
99 |
Q |
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| T |
46768911 |
cgcacatggtagtaaattatttggcttcagtaaactgagtcatttccaaaaaagggaaggtaattttacaacttttatatttaaacactcttaaatttcc |
46768812 |
T |
|
| Q |
100 |
tacatttatttaacaccttattttctctatatattt----------tcctattacaccaacaacatatcacatcttttagatcactcactctatctctct |
189 |
Q |
| |
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|||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46768811 |
tacatttatttaacaccttattttatatatatatatatatatatcttcctattacaccaacaacatatcacatcttttagatcactcactctatctctct |
46768712 |
T |
|
| Q |
190 |
ctcaagagatgggcttttggtgtctatcaatctatatctcttcatatcagatcatatcaatatcattttccataattttatgagatgtgtacaatccatt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
46768711 |
ctcaagagatgggcttttggtgtctatcaatctatatctcttcatatcagatcatatcaatatcattttccataattttatgaaatgtgtacaatccttt |
46768612 |
T |
|
| Q |
290 |
ggtcaacactttacgaatttttccacaaaggatggaaataaatatatatagaatatattcagtgtattatttatacgaagtaaaaagaatgtggttgtaa |
389 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46768611 |
ggtcaacactttactaatttttccacaaaggatggaaataaatatatatagaatatattcagtgtattatttatacgaagtaaaaagaatgtggttgtaa |
46768512 |
T |
|
| Q |
390 |
caaaatgaacagccctagcactgatgcttaaacaaaacaagaaataaagcaaatgtggcaatataaatacagcatccaatcatgaaagcaaatcatgaac |
489 |
Q |
| |
|
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| T |
46768511 |
caaaatgaacagccctagcactgatgcttaaacaaaacaagaaataaagcaaatgtggcaatataaatacagcatccaatcatgaaagcaaatcatgaac |
46768412 |
T |
|
| Q |
490 |
aaaacataacataaactatagtaagtgactgactgagaggaaatttaaaatttctcaaatttcaggtatgccgt |
563 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
46768411 |
aaaacataacataaactatagtaagtgactgactgagaggaaatttcaaatttctcaaatttcaggtatgccgt |
46768338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 364 - 497
Target Start/End: Complemental strand, 46773305 - 46773178
Alignment:
| Q |
364 |
acgaagtaaaaagaatgtggttgtaacaaaatgaacagccctagcactgatgcttaaacaaaacaagaaataaagcaaatgtggcaatataaatacagca |
463 |
Q |
| |
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||||||||||||||||||| ||||||| |||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||| || |
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| T |
46773305 |
acgaagtaaaaagaatgtgtttgtaacctaatgaacagcactag------tgcttaaacaaagcaagaaactaagcaaatgtggcaatataaatacaaca |
46773212 |
T |
|
| Q |
464 |
tccaatcatgaaagcaaatcatgaacaaaacata |
497 |
Q |
| |
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||||| | ||||| | ||||| |||||||||||| |
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|
| T |
46773211 |
tccaagcttgaaaactaatcacgaacaaaacata |
46773178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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