View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5591_low_11 (Length: 293)

Name: NF5591_low_11
Description: NF5591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5591_low_11
NF5591_low_11
[»] chr3 (2 HSPs)
chr3 (19-221)||(11093584-11093784)
chr3 (192-228)||(14338499-14338535)
[»] chr8 (1 HSPs)
chr8 (170-235)||(27733847-27733912)
[»] chr7 (2 HSPs)
chr7 (166-228)||(1885580-1885642)
chr7 (199-235)||(6091327-6091363)
[»] chr5 (5 HSPs)
chr5 (166-228)||(21319935-21319997)
chr5 (199-234)||(18106655-18106690)
chr5 (178-235)||(10010554-10010611)
chr5 (192-233)||(38784808-38784849)
chr5 (170-234)||(38749557-38749621)
[»] chr6 (3 HSPs)
chr6 (192-230)||(14514793-14514831)
chr6 (171-228)||(19369824-19369881)
chr6 (195-224)||(34037823-34037852)
[»] chr1 (2 HSPs)
chr1 (176-225)||(43966816-43966865)
chr1 (192-228)||(40686774-40686810)
[»] scaffold0024 (1 HSPs)
scaffold0024 (170-234)||(18102-18166)
[»] chr4 (1 HSPs)
chr4 (176-228)||(13307884-13307936)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 11093784 - 11093584
Alignment:
Q  19 tttctatctcgtgtttattgttaattttaattctacctgttttcaattgtggagcttgcatttcatgatctgaaatggttgtgtgaactgagttattttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11093784 tttctatctcgtgtttattgttaattttaattctacctgttttcaattgtggagcttgcatttcatgatctgaaatggttgtgtgaactgagttattttc 11093685  T
Q  119 tttctttatatctgggtttaggatttgtccgatatgtgtcggtgattgacaccgacacgacaccaacacatcagattactttgaattatatcattttttc 218  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  11093684 tttctttatatctggg--aaggatttgtccgatatgtgtcggtgattgacattgacacgacaccaacacatctgattactttgaattatgtcattttttc 11093587  T
Q  219 aaa 221  Q
    |||    
T  11093586 aaa 11093584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 14338499 - 14338535
Alignment:
Q  192 gattactttgaattatatcattttttcaaaattttat 228  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  14338499 gattacattgaattatgtcattttttcaaaattttat 14338535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 27733912 - 27733847
Alignment:
Q  170 ccgacacgacaccaacacatcagattactttgaattatatcattttttcaaaattttattggtgtt 235  Q
    |||||| ||||||||||| |  |||||| ||||||||||||||||| |||||||||||| ||||||    
T  27733912 ccgacatgacaccaacacttgtgattacattgaattatatcattttctcaaaattttatcggtgtt 27733847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 1885642 - 1885580
Alignment:
Q  166 gacaccgacacgacaccaacacatcagattactttgaattatatcattttttcaaaattttat 228  Q
    |||||| |||||||||| |||| |  |||||| ||||||||| ||||||||||||||||||||    
T  1885642 gacaccaacacgacaccgacacttgtgattacattgaattatgtcattttttcaaaattttat 1885580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 6091363 - 6091327
Alignment:
Q  199 ttgaattatatcattttttcaaaattttattggtgtt 235  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  6091363 ttgaattatatcattttctcaaaattttattgatgtt 6091327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 21319935 - 21319997
Alignment:
Q  166 gacaccgacacgacaccaacacatcagattactttgaattatatcattttttcaaaattttat 228  Q
    |||||||||| |||| | |||| |  |||||| ||||||||||||||||||||||||||||||    
T  21319935 gacaccgacatgacatcgacacttgtgattacattgaattatatcattttttcaaaattttat 21319997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 18106655 - 18106690
Alignment:
Q  199 ttgaattatatcattttttcaaaattttattggtgt 234  Q
    |||||||||||||||||||||||||||||| |||||    
T  18106655 ttgaattatatcattttttcaaaattttatcggtgt 18106690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 10010611 - 10010554
Alignment:
Q  178 acaccaacacatcagattactttgaattatatcattttttcaaaattttattggtgtt 235  Q
    ||||| ||||||  ||||||  |||||||| ||||||||||||||||||||| |||||    
T  10010611 acaccgacacatgtgattacaatgaattatgtcattttttcaaaattttattagtgtt 10010554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 38784849 - 38784808
Alignment:
Q  192 gattactttgaattatatcattttttcaaaattttattggtg 233  Q
    |||||| ||||||||||||||||||||| |||||||| ||||    
T  38784849 gattacattgaattatatcattttttcacaattttatcggtg 38784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 38749557 - 38749621
Alignment:
Q  170 ccgacacgacaccaacacatcagattactttgaattatatcattttttcaaaattttattggtgt 234  Q
    ||||||| ||||||||||||   ||||| ||||||||| ||||||||||||| | |||| |||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgt 38749621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 14514831 - 14514793
Alignment:
Q  192 gattactttgaattatatcattttttcaaaattttattg 230  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  14514831 gattacattgaattatatcatttttttaaaattttattg 14514793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 19369881 - 19369824
Alignment:
Q  171 cgacacgacaccaacacatcagattactttgaattatatcattttttcaaaattttat 228  Q
    |||||||||||| |||| |  |||||| ||||||||| ||||||| ||||||||||||    
T  19369881 cgacacgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttat 19369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 224
Target Start/End: Complemental strand, 34037852 - 34037823
Alignment:
Q  195 tactttgaattatatcattttttcaaaatt 224  Q
    ||||||||||||||||||||||||||||||    
T  34037852 tactttgaattatatcattttttcaaaatt 34037823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 43966865 - 43966816
Alignment:
Q  176 cgacaccaacacatcagattactttgaattatatcattttttcaaaattt 225  Q
    ||||||||||||||  |||||| ||||||| ||||||||| |||||||||    
T  43966865 cgacaccaacacatgtgattacattgaattgtatcattttctcaaaattt 43966816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 40686774 - 40686810
Alignment:
Q  192 gattactttgaattatatcattttttcaaaattttat 228  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  40686774 gattacattgaattatatcattttatcaaaattttat 40686810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 18102 - 18166
Alignment:
Q  170 ccgacacgacaccaacacatcagattactttgaattatatcattttttcaaaattttattggtgt 234  Q
    ||||||| |||||||||| |  |||||| ||||||||| | ||||| |||||||||||| |||||    
T  18102 ccgacacaacaccaacacttgcgattacattgaattatgttattttctcaaaattttatcggtgt 18166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 13307936 - 13307884
Alignment:
Q  176 cgacaccaacacatcagattactttgaattatatcattttttcaaaattttat 228  Q
    |||||||||||| |  |||||| ||||||||| ||||||| ||||||||||||    
T  13307936 cgacaccaacacttgtgattacattgaattatgtcattttctcaaaattttat 13307884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University