View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5591_low_6 (Length: 367)
Name: NF5591_low_6
Description: NF5591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5591_low_6 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 140 - 367
Target Start/End: Original strand, 26312302 - 26312521
Alignment:
| Q |
140 |
cccataccaatcccttaaatagggctagtgtaacatattgattgttggggtcggtacctattttgttttcgtatttagcttcaagtggagtcacatagct |
239 |
Q |
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| T |
26312302 |
cccataccaatcccttaaatagggctagtgtaacatattgatt--------cggtacctattttgttttagtatttagcttcaaatggagtcacatagct |
26312393 |
T |
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| Q |
240 |
tttccagtgatgtatggtcctgttaaagagggtaaagacgagatgtgagagacagagaaagagctaggatggaggctctaatagaataggagattcagca |
339 |
Q |
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| T |
26312394 |
tttccagtgatgtatggtcctgttaaagagggtaaagacgagatgtgagagacagagaaagagctaggatggaggctctaatagaatcggagattcagca |
26312493 |
T |
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| Q |
340 |
tattgaatcagatgggttagtcgtggat |
367 |
Q |
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| T |
26312494 |
tattgaatcagatgggttagtcgtggat |
26312521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 26311682 - 26311810
Alignment:
| Q |
19 |
caaccggttcttagccaaaggccagttcccccttgacccaactatggaggcgttgccacccatggtggtctaaaaatgggggaccatttactggacagtg |
118 |
Q |
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| T |
26311682 |
caaccagttcttagccaaaggacagttcccccttcacccaactatggaggcgttgccacccgtggtggtctaaaaatgggggaccatttactggacagtg |
26311781 |
T |
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| Q |
119 |
gctagttgtcgagttatatcccccatacc |
147 |
Q |
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| T |
26311782 |
gctacttgtcgagttatatcccccatacc |
26311810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 26288247 - 26288328
Alignment:
| Q |
286 |
gagagacagagaaagagctaggatggaggctctaatagaataggagattcagcatattgaatcagatgggttagtcgtggat |
367 |
Q |
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| T |
26288247 |
gagagacagagaaagagctaggatggaggctttaatagaatcggagatgcagcatattgaatcagatgggttagtcgtggat |
26288328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 26319932 - 26319997
Alignment:
| Q |
207 |
ttcgtatttagcttcaagtggagtcacatagcttttccagtgatgtatggtcctgttaaagagggt |
272 |
Q |
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| T |
26319932 |
ttcgtatttagctttaagtggagtcccatagttcttccagtgatgtatggtcctgttaaaaagggt |
26319997 |
T |
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