View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5591_low_8 (Length: 352)
Name: NF5591_low_8
Description: NF5591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5591_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 13206991 - 13206830
Alignment:
| Q |
9 |
acatcatcaacgttcggtgtcctgtttccgggtgcagtgggtt-gttagaagctgagttttgccgttctattcttccggccgagctttttgaaagctggt |
107 |
Q |
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| T |
13206991 |
acatcatcaacgttcggtgtcctgtttctgggtgcaatggttttgctagaagctgagttatgtcgttctattcttcctgtggtcctttttgaacgctggt |
13206892 |
T |
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| Q |
108 |
gtaaggcgttgtgcgaggctttgtttgtttcagagaaattctattgtccctttagagattgt |
169 |
Q |
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| T |
13206891 |
gtaaggcgttgtgcgaggctttgtttgttttagagaaattctattgtccctttagagattgt |
13206830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 13206816 - 13206783
Alignment:
| Q |
251 |
tgtaagattccatggcatgaagggattgaatgca |
284 |
Q |
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| T |
13206816 |
tgtaagattccatggcatgaagggattgaatgca |
13206783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 283
Target Start/End: Complemental strand, 43920995 - 43920806
Alignment:
| Q |
89 |
gagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtttgtttcag-agaaattctattgtccctttagagattgttctgctcttttgatcaag |
187 |
Q |
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| T |
43920995 |
gagctttttgaacgatggtgtaag-cgttgtgcgaggctttgtttgtttcgggagaaattctattgtccctttacagattgttcttctcttttgat---- |
43920901 |
T |
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| Q |
188 |
gaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgtaagattccatggcatgaagggattgaatgc |
283 |
Q |
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| T |
43920900 |
-acggaaatgtggcaattacaaattcagaatgtcgtcatagtaatatgatgttttgtgcacgctgtaagattccatggcatgaatggattgaatgc |
43920806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 284
Target Start/End: Original strand, 19270475 - 19270706
Alignment:
| Q |
56 |
gaagctgagttttgccgttctattcttccggccgagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtt---tgtttcagagaaattctatt |
152 |
Q |
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| T |
19270475 |
gaagcggagttttgccgttttattctgcctgccgaggtttttgatcgctggggtcaagggttgtgtgaggctatgttcgatgtttcagaaaagttctact |
19270574 |
T |
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| Q |
153 |
gtccctttagagattgttctgctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatg |
252 |
Q |
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| T |
19270575 |
gtccctttgcagactgttctgctcttttgatcaatgacggaatcgatactgttaaaaactcagaatgtcctaattgtaataggatgttttgtgcaaaatg |
19270674 |
T |
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| Q |
253 |
taagattccatggcatgaagggattgaatgca |
284 |
Q |
| |
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| T |
19270675 |
taaggttccatggcatgaaggaatcgaatgca |
19270706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 273
Target Start/End: Original strand, 19314772 - 19314983
Alignment:
| Q |
65 |
ttttgccgttctattcttccggccgagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtt---tgtttcagagaaattctattgtcccttta |
161 |
Q |
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| T |
19314772 |
ttttgccgttctattcttccggccaaggtttttgaacggtggggtaaggcgctttgtgaggctttgttcgatgtttcgaataaattctattgtccatttc |
19314871 |
T |
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| Q |
162 |
gagattgttctgctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgtaagattcc |
261 |
Q |
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| T |
19314872 |
cagactgttcagcacttttgatcgatgatggaacggaagctgttagaaattcagaatgccctaattgtaataggatgttttgtgcacaatgtaaagttcc |
19314971 |
T |
|
| Q |
262 |
atggcatgaagg |
273 |
Q |
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|||||||||||| |
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| T |
19314972 |
atggcatgaagg |
19314983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 19254722 - 19254998
Alignment:
| Q |
11 |
atcatcaacgttcggtgtcctgtttccgggtgcagtgggttgttagaagctgagttttgccgttctattcttccggccgagctttttgaaagctggtgta |
110 |
Q |
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| T |
19254722 |
atcatcaacattcggtgtcctttttctggatgcagtggtttgttggaatcggactattgccagtcgattcttcctgccgaggtttttgaccgatggggga |
19254821 |
T |
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| Q |
111 |
aggcgttgtgcgaggctttgtttgtt---tcagagaaattctattgtccctttagagattgttctgctcttttgatcaaggaaggaactgaggcaattag |
207 |
Q |
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| T |
19254822 |
acgcgtcttgcgaggtgttgattgatgattcggaaaaattctactgtccctttgcagactgttcagctctgttgatcaatgatgaaacggaggctgttat |
19254921 |
T |
|
| Q |
208 |
aaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgtaagattccatggcatgaagggattgaatgca |
284 |
Q |
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| T |
19254922 |
gaaagcagaatgtccttattgtgaaaggatgttctgtgcacaatgtaaagttccatggcatgaagggattgaatgca |
19254998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 298
Target Start/End: Original strand, 19291927 - 19292052
Alignment:
| Q |
173 |
gctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgtaagattccatggcatgaag |
272 |
Q |
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| T |
19291927 |
gctcttttgatcaatgatggaaccgaggttgttaagaattcaatatgtcctaattgtaataggatgttatgtgcacaatgtaaagttccatggcatgaag |
19292026 |
T |
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| Q |
273 |
ggattgaatgcattgggtttaagaag |
298 |
Q |
| |
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| T |
19292027 |
ggattgaatgcagcgggtttgagaag |
19292052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 19260440 - 19260486
Alignment:
| Q |
208 |
aaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgta |
254 |
Q |
| |
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| T |
19260440 |
aaattcagaatgtcctaattgtaataggatgttttatgcacaatgta |
19260486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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