View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5591_low_9 (Length: 341)

Name: NF5591_low_9
Description: NF5591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5591_low_9
NF5591_low_9
[»] chr3 (13 HSPs)
chr3 (174-332)||(23561006-23561163)
chr3 (218-319)||(12060749-12060850)
chr3 (209-296)||(48866275-48866362)
chr3 (205-284)||(51825512-51825592)
chr3 (209-291)||(49334233-49334315)
chr3 (1-48)||(23560833-23560880)
chr3 (251-290)||(52293460-52293499)
chr3 (256-290)||(29537077-29537111)
chr3 (256-290)||(47855279-47855313)
chr3 (256-290)||(48825952-48825986)
chr3 (256-289)||(7820533-7820566)
chr3 (238-283)||(42632852-42632897)
chr3 (256-296)||(47854620-47854660)
[»] chr6 (6 HSPs)
chr6 (174-332)||(14326231-14326389)
chr6 (174-332)||(14419241-14419399)
chr6 (209-296)||(16269513-16269600)
chr6 (233-284)||(8412236-8412287)
chr6 (206-263)||(22299804-22299861)
chr6 (214-283)||(28931012-28931083)
[»] chr1 (14 HSPs)
chr1 (209-296)||(2971833-2971920)
chr1 (202-298)||(40812500-40812595)
chr1 (210-295)||(21278114-21278199)
chr1 (209-290)||(35684098-35684179)
chr1 (209-282)||(25786115-25786189)
chr1 (233-283)||(47411368-47411418)
chr1 (209-290)||(48973338-48973419)
chr1 (209-288)||(34531805-34531884)
chr1 (209-278)||(52181200-52181270)
chr1 (9-42)||(2972090-2972123)
chr1 (206-263)||(13641415-13641472)
chr1 (292-332)||(3978122-3978162)
chr1 (234-278)||(16218399-16218443)
chr1 (238-282)||(25787089-25787133)
[»] chr2 (7 HSPs)
chr2 (202-332)||(14510417-14510547)
chr2 (209-290)||(41312640-41312721)
chr2 (209-290)||(33836909-33836990)
chr2 (209-294)||(42246726-42246811)
chr2 (256-290)||(3665364-3665398)
chr2 (209-290)||(2305680-2305761)
chr2 (222-287)||(6208974-6209039)
[»] chr7 (10 HSPs)
chr7 (209-296)||(33458443-33458530)
chr7 (233-284)||(35128112-35128163)
chr7 (233-284)||(22060608-22060659)
chr7 (233-296)||(22061715-22061777)
chr7 (209-283)||(30223872-30223946)
chr7 (251-289)||(36673773-36673811)
chr7 (245-290)||(2903978-2904023)
chr7 (209-284)||(7146924-7147000)
chr7 (292-332)||(38406096-38406136)
chr7 (251-287)||(41126382-41126418)
[»] chr8 (7 HSPs)
chr8 (218-319)||(8096469-8096570)
chr8 (233-282)||(38589967-38590016)
chr8 (210-297)||(36071273-36071360)
chr8 (233-282)||(27750541-27750590)
chr8 (257-286)||(38665803-38665832)
chr8 (1-42)||(45377790-45377831)
chr8 (238-282)||(38590937-38590981)
[»] chr5 (3 HSPs)
chr5 (209-290)||(40059221-40059302)
chr5 (209-298)||(26911290-26911379)
chr5 (251-290)||(15613644-15613683)
[»] chr4 (12 HSPs)
chr4 (209-299)||(4373508-4373598)
chr4 (209-292)||(40146528-40146611)
chr4 (233-284)||(55953772-55953823)
chr4 (233-284)||(1273353-1273404)
chr4 (233-284)||(26788667-26788718)
chr4 (209-290)||(30671960-30672041)
chr4 (233-284)||(33377284-33377335)
chr4 (209-287)||(526614-526692)
chr4 (256-290)||(936357-936391)
chr4 (256-290)||(15446609-15446643)
chr4 (209-283)||(29834328-29834402)
chr4 (202-283)||(47606488-47606570)
[»] scaffold0178 (1 HSPs)
scaffold0178 (209-295)||(2160-2246)
[»] scaffold0122 (1 HSPs)
scaffold0122 (257-332)||(17123-17198)
[»] scaffold0002 (1 HSPs)
scaffold0002 (251-289)||(458398-458436)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 174 - 332
Target Start/End: Original strand, 23561006 - 23561163
Alignment:
Q  174 attagtaagtaattcaatagaaatgaatatgatcctatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaa 273  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  23561006 attagtaagaaattcaatagaaatgaatatgatcctatgttgtaagttcattatatatctgtatgctttctaaattcagtcattgatcaccaatcttaaa 23561105  T
Q  274 tgacacgtggacaaggggttaacggaaaggaccacaatagtaaacgtcagaagaattat 332  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23561106 tgacatgtggacaaggggttaacggaaagga-cacaatagtaaacgtcagaagaattat 23561163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 12060850 - 12060749
Alignment:
Q  218 agttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaacggaaaggaccacaatagtaaa 317  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||| | |  ||| | ||| ||||||| |||||||||    
T  12060850 agtttattgtatatttgcgtgctttctaaattcagccattgatcaccaatcttaagtgacatgtggatatgaagttgatggagaggaccaaaatagtaaa 12060751  T
Q  318 cg 319  Q
    ||    
T  12060750 cg 12060749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 48866362 - 48866275
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaac 296  Q
    |||||||| ||| |||||||||| |||| ||||||||||| ||| | ||||||| |||||| |||||||||||| |||||||||||||    
T  48866362 tatgttgtgagtccattgtatatttgtgcgctttctaaatccagtccttgatcatcaatctaaaatgacacgtgaacaaggggttaac 48866275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 51825512 - 51825592
Alignment:
Q  205 atcctatgttgtaagttcattgtatatc-tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||| ||| ||||||  |||| || |||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  51825512 atcctatgctgtgagttcacagtatgtcatgtgtgctttttaaattcaaccattgatcaccaatcttaactgacacgtgga 51825592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 49334233 - 49334315
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaagggg 291  Q
    |||||||| |||||||||||||| |||| ||| || |||| |||||||  ||||||||| |||||||| | ||||||||||||    
T  49334233 tatgttgtgagttcattgtatatttgtgcgctgtccaaatccagccatcaatcaccaatattaaatgaaatgtggacaagggg 49334315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23560833 - 23560880
Alignment:
Q  1 gattaatattgatgatgaatgattggaatgcgaaaatgagttgtgtat 48  Q
    |||||||| | |||||||||||||||||| |||||||||||| |||||    
T  23560833 gattaatactaatgatgaatgattggaattcgaaaatgagttttgtat 23560880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 52293460 - 52293499
Alignment:
Q  251 agccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  52293460 agcccttgatcaccaatcttaaatgacatgtggacaaggg 52293499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 29537077 - 29537111
Alignment:
Q  256 ttgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    ||||||||||||||||||||||| |||||||||||    
T  29537077 ttgatcaccaatcttaaatgacatgtggacaaggg 29537111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 47855279 - 47855313
Alignment:
Q  256 ttgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    ||||||||||||||||||||||| |||||||||||    
T  47855279 ttgatcaccaatcttaaatgacatgtggacaaggg 47855313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 48825986 - 48825952
Alignment:
Q  256 ttgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    ||||||||||||||||||||||| |||||||||||    
T  48825986 ttgatcaccaatcttaaatgacatgtggacaaggg 48825952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 7820566 - 7820533
Alignment:
Q  256 ttgatcaccaatcttaaatgacacgtggacaagg 289  Q
    ||||||||||||||||||||||| ||||||||||    
T  7820566 ttgatcaccaatcttaaatgacatgtggacaagg 7820533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 42632897 - 42632852
Alignment:
Q  238 gctttctaaattcagccattgatcaccaatcttaaatgacacgtgg 283  Q
    ||||| ||||| || || ||||||||||||||||||||||||||||    
T  42632897 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgg 42632852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 47854660 - 47854620
Alignment:
Q  256 ttgatcaccaatcttaaatgacacgtggacaaggggttaac 296  Q
    |||||||| |||||||||||||| ||||||||||| |||||    
T  47854660 ttgatcacaaatcttaaatgacatgtggacaagggtttaac 47854620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 14326389 - 14326231
Alignment:
Q  174 attagtaagtaattcaatagaaatgaatatgatcctatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaa 273  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  14326389 attagtaagaaattcaatagaaatgaatatgatcctatgttgtgagttcattgtatatttgtgcgctttctaaattcagccattgatcaccaatcttaaa 14326290  T
Q  274 tgacacgtggacaaggggttaacggaaaggaccacaatagtaaacgtcagaagaattat 332  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||  |||||||||||    
T  14326289 tgacaagtggataagaggttaacggaaaggaccacaatagtaaacgatagaagaattat 14326231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 14419399 - 14419241
Alignment:
Q  174 attagtaagtaattcaatagaaatgaatatgatcctatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaa 273  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  14419399 attagtaagaaattcaatagaaatgaatatgatcctatgttgtgagttcattgtatatttgtgcgctttctaaattcagccattgatcaccaatcttaaa 14419300  T
Q  274 tgacacgtggacaaggggttaacggaaaggaccacaatagtaaacgtcagaagaattat 332  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||  |||||||||||    
T  14419299 tgacaagtggataagaggttaacggaaaggaccacaatagtaaacgatagaagaattat 14419241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 16269513 - 16269600
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaac 296  Q
    ||||||||  ||||||||||| | |||| ||||||||||| || || ||||||||||||||||||| ||||||||| |||||||||||    
T  16269513 tatgttgtgcgttcattgtatgtttgtgcgctttctaaatccaacccttgatcaccaatcttaaattacacgtggataaggggttaac 16269600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 8412236 - 8412287
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  8412236 tgtgtgcttcttaaattcaaccattgatcacgaatcttaaatgacatgtgga 8412287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 22299804 - 22299861
Alignment:
Q  206 tcctatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcac 263  Q
    ||||||||| | ||||||||||||||||||| ||| ||||||| ||||  ||||||||    
T  22299804 tcctatgttttgagttcattgtatatctgtgcgctctctaaatccagctcttgatcac 22299861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 28931012 - 28931083
Alignment:
Q  214 tgtaagttcattgtatatctgt--gtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgg 283  Q
    |||||||||||||||||| |||  ||||||| ||||| || || ||||||| ||||||||| ||||| ||||    
T  28931012 tgtaagttcattgtatatttgtgagtgctttttaaatccaacccttgatcatcaatcttaagtgacatgtgg 28931083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 2971920 - 2971833
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaac 296  Q
    |||||||| |||||||| ||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2971920 tatgttgtgagttcattttatatttgtgtgctttctaaatccagcccttgatcgccaatcttaaatgacacgtggacaaggggttaac 2971833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 40812500 - 40812595
Alignment:
Q  202 atgatcctatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaacgg 298  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||| || | |||||||||| ||||||| ||||| ||||||||  |||||||||    
T  40812500 atgattctatgttgtgagttcattgtatatttgtgtgctttctaaatccaacaattgatcacc-atcttaactgacatgtggacaaaaggttaacgg 40812595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 21278114 - 21278199
Alignment:
Q  210 atgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaa 295  Q
    ||||||| |||| ||||||||| |||| ||  ||||||||||| | ||||||||||||||||||||||||||||| || |||||||    
T  21278114 atgttgtgagtttattgtatatttgtgcgccctctaaattcagtctttgatcaccaatcttaaatgacacgtggataaagggttaa 21278199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 35684098 - 35684179
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    |||||||| || ||||||||||  ||||| |||| |||||  |||| |||||| |||||||||||||||| |||||||||||    
T  35684098 tatgttgtgagctcattgtatacttgtgtactttttaaatctagcccttgatctccaatcttaaatgacatgtggacaaggg 35684179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 25786189 - 25786115
Alignment:
Q  209 tatgttgtaagttcattgtatatc-tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtg 282  Q
    |||||||| ||| ||| |||| || |||||||||| ||||| || || |||||||||||||||||||||||||||    
T  25786189 tatgttgtgagtccatggtatgtcatgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtg 25786115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 47411368 - 47411418
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgg 283  Q
    |||||||||| |||||||| || ||||||||||||||||||||||| ||||    
T  47411368 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacatgtgg 47411418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 48973419 - 48973338
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    |||||||| ||  |||||||||  ||||| ||||  ||||  |||| ||||||||||||||||||||||| |||||||||||    
T  48973419 tatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtggacaaggg 48973338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 34531884 - 34531805
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaag 288  Q
    |||||||| ||  |||||||||| ||||| ||||  ||||  |||| |||||||||||||||||||||||  ||||||||    
T  34531884 tatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatttggacaag 34531805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 52181200 - 52181270
Alignment:
Q  209 tatgttgtaagttcattgtatatc-tgtgtgctttctaaattcagccattgatcaccaatcttaaatgaca 278  Q
    |||||||| ||||||  |||| || |||||||||| ||||| || || |||||||||||||||||||||||    
T  52181200 tatgttgtgagttcacggtatgtcatgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgaca 52181270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 2972123 - 2972090
Alignment:
Q  9 ttgatgatgaatgattggaatgcgaaaatgagtt 42  Q
    ||||||||||||||||||||| ||||||||||||    
T  2972123 ttgatgatgaatgattggaattcgaaaatgagtt 2972090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 13641472 - 13641415
Alignment:
Q  206 tcctatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcac 263  Q
    ||||||||| | ||||||||||||||||||| ||| ||||||| ||||  ||||||||    
T  13641472 tcctatgttttgagttcattgtatatctgtgcgctctctaaatccagctcttgatcac 13641415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 3978162 - 3978122
Alignment:
Q  292 ttaacggaaaggaccacaatagtaaacgtcagaagaattat 332  Q
    |||||||| ||||||| ||||||||||| ||||||||||||    
T  3978162 ttaacggagaggaccaaaatagtaaacgacagaagaattat 3978122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 16218399 - 16218443
Alignment:
Q  234 gtgtgctttctaaattcagccattgatcaccaatcttaaatgaca 278  Q
    ||||||||| |||||||| || |||||||||||| ||||||||||    
T  16218399 gtgtgctttttaaattcaaccgttgatcaccaattttaaatgaca 16218443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 25787089 - 25787133
Alignment:
Q  238 gctttctaaattcagccattgatcaccaatcttaaatgacacgtg 282  Q
    ||||| ||||| || || |||||||||||||||||||||||||||    
T  25787089 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtg 25787133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 332
Target Start/End: Original strand, 14510417 - 14510547
Alignment:
Q  202 atgatcctatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaacggaaa 301  Q
    |||||| |||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||| | |||| |||||||||| | |    
T  14510417 atgatcatatgttgtgagtgcattgtatatttgtgtgctttctaaatccagtcattgatcatcaatcttaaatgacacatagacagggggttaacgaaga 14510516  T
Q  302 ggaccacaatagtaaacgtcagaagaattat 332  Q
     ||| | ||||||||||| ||||||| ||||    
T  14510517 tgactaaaatagtaaacggcagaagagttat 14510547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 41312721 - 41312640
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    |||||||| ||| ||||||||| |||||| ||||  ||||  | || ||||||||||||||||||||||| |||||||||||    
T  41312721 tatgttgtgagtccattgtatacctgtgtacttttcaaatctaacccttgatcaccaatcttaaatgacatgtggacaaggg 41312640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 33836990 - 33836909
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    |||||||| ||  |||||||||  ||||| ||||  ||||  |||| ||||||||||||||||||||||| |||||||||||    
T  33836990 tatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtggacaaggg 33836909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 42246811 - 42246726
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggtta 294  Q
    |||||||| ||||| |||||||| |||| ||||||||||| || || ||||||| | ||||||| ||| ||||||| || ||||||    
T  42246811 tatgttgtgagttcgttgtatatatgtgcgctttctaaatccaacccttgatcatccatcttaagtgatacgtggataatgggtta 42246726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 3665398 - 3665364
Alignment:
Q  256 ttgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    ||||||||||||||||||||||| |||||||||||    
T  3665398 ttgatcaccaatcttaaatgacatgtggacaaggg 3665364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 2305761 - 2305680
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    |||||||| ||  |||||||||  ||||| ||||  ||||  |||| |||||| |||||||||||||||| |||||||||||    
T  2305761 tatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatctccaatcttaaatgacatgtggacaaggg 2305680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 6208974 - 6209039
Alignment:
Q  222 cattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaa 287  Q
    |||||||||  ||||| |||| |||||  | || ||||||||||||||||||||||| ||||||||    
T  6208974 cattgtatacttgtgtactttttaaatctaacccttgatcaccaatcttaaatgacatgtggacaa 6209039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 33458530 - 33458443
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaac 296  Q
    |||||||||||| |||||||||| |||| |||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  33458530 tatgttgtaagtccattgtatatttgtgcgcttactaaatccagcccttgatcactaatcttaaatgacacgtggacaaggggttaac 33458443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 35128112 - 35128163
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||||| ||||| || || |||||||||||||||||||||||||||||    
T  35128112 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgga 35128163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 22060659 - 22060608
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||||| ||||| || || |||||||||||||||||||||| ||||||    
T  22060659 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgactcgtgga 22060608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 22061715 - 22061777
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaac 296  Q
    |||||||||| ||||| || || |||||| ||||||||||||||||||||| ||||| ||||||    
T  22061715 tgtgtgctttttaaatccaaccgttgatccccaatcttaaatgacacgtgg-caaggagttaac 22061777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 30223872 - 30223946
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgg 283  Q
    |||||||| ||| |||||||||  ||||| ||||  ||||  |||| ||||||||||||||||||||||| ||||    
T  30223872 tatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 30223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 36673773 - 36673811
Alignment:
Q  251 agccattgatcaccaatcttaaatgacacgtggacaagg 289  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  36673773 agcccttgatcaccaatcttaaatgacatgtggacaagg 36673811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 2903978 - 2904023
Alignment:
Q  245 aaattcagccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    ||||| || ||||||||||||||||||||||||| | |||||||||    
T  2903978 aaatttagtcattgatcaccaatcttaaatgacatgcggacaaggg 2904023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 7147000 - 7146924
Alignment:
Q  209 tatgttgtaagttcattgtata-tctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||||||||||| ||||  | |||||||||| ||||| || || || |||| ||||||||||||||| |||||    
T  7147000 tatgttgtaagttcatggtatgctatgtgtgctttttaaatccaaccgttcatcatcaatcttaaatgacatgtgga 7146924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 38406136 - 38406096
Alignment:
Q  292 ttaacggaaaggaccacaatagtaaacgtcagaagaattat 332  Q
    |||||||||||||||| || |||||||||||||||| ||||    
T  38406136 ttaacggaaaggaccaaaacagtaaacgtcagaagatttat 38406096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 41126418 - 41126382
Alignment:
Q  251 agccattgatcaccaatcttaaatgacacgtggacaa 287  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  41126418 agcccttgatcaccaatcttaaatgacatgtggacaa 41126382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 8096469 - 8096570
Alignment:
Q  218 agttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaacggaaaggaccacaatagtaaa 317  Q
    |||| ||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||| ||| || ||| ||||| ||||||| |||||||||    
T  8096469 agtttattgtatatttgcgtgctttctaaatccagccattgatcaccaatcttaaatgacatgtgaacatggagttgacggagaggaccaaaatagtaaa 8096568  T
Q  318 cg 319  Q
    ||    
T  8096569 cg 8096570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 38590016 - 38589967
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtg 282  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||    
T  38590016 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtg 38589967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 36071273 - 36071360
Alignment:
Q  210 atgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaacg 297  Q
    ||||||| || | ||||||||| |||| ||  ||||||| ||||| |||||||||||| |||||| ||||||||| || |||||||||    
T  36071273 atgttgtgaggttattgtatatttgtgcgccctctaaatccagcccttgatcaccaattttaaataacacgtggataaagggttaacg 36071360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 27750541 - 27750590
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtg 282  Q
    |||||||||| ||||| || || ||||||||||||||||| |||||||||    
T  27750541 tgtgtgctttttaaatccaaccgttgatcaccaatcttaactgacacgtg 27750590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 38665803 - 38665832
Alignment:
Q  257 tgatcaccaatcttaaatgacacgtggaca 286  Q
    ||||||||||||||||||||||||||||||    
T  38665803 tgatcaccaatcttaaatgacacgtggaca 38665832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45377790 - 45377831
Alignment:
Q  1 gattaatattgatgatgaatgattggaatgcgaaaatgagtt 42  Q
    |||| ||||||||||||||||||||| || ||||||||||||    
T  45377790 gattgatattgatgatgaatgattggcattcgaaaatgagtt 45377831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 38590937 - 38590981
Alignment:
Q  238 gctttctaaattcagccattgatcaccaatcttaaatgacacgtg 282  Q
    ||||| |||||||| |  |||||||||||||||||||||||||||    
T  38590937 gctttttaaattcaactgttgatcaccaatcttaaatgacacgtg 38590981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 40059221 - 40059302
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    |||||||| |||||||||||||| |||| ||||||||||| ||||  ||||||| ||||||||||||||||||| |||||||    
T  40059221 tatgttgtgagttcattgtatatgtgtgcgctttctaaatccagctcttgatcatcaatcttaaatgacacgtgaacaaggg 40059302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 26911379 - 26911290
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaacgg 298  Q
    |||||||  |||||||| ||||| |||| ||||||||||| || || |||||||   ||||||| ||||||||||| || ||||||||||    
T  26911379 tatgttgcgagttcattctatatatgtgcgctttctaaatccaacccttgatcattcatcttaagtgacacgtggataatgggttaacgg 26911290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 15613683 - 15613644
Alignment:
Q  251 agccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  15613683 agccattgatcacaaatcttaaatgacatgtggacaaggg 15613644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 4373598 - 4373508
Alignment:
Q  209 tatgttgtaagttcattgtatatc-tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaacgga 299  Q
    |||||||| ||| ||||||||| | ||||||||||  |||| |||||||| |||||||||| ||||||||||||||| ||| ||||||||||    
T  4373598 tatgttgtgagtccattgtataccatgtgtgcttttcaaatccagccattaatcaccaatcctaaatgacacgtgga-aagaggttaacgga 4373508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 40146528 - 40146611
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggt 292  Q
    ||||||||  || |||||||||| |||| |||| |||||| ||||| |||||||| || ||||||||||| |||||||||||||    
T  40146528 tatgttgtgcgtccattgtatatttgtgcgcttgctaaatccagcccttgatcactaaacttaaatgacatgtggacaaggggt 40146611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 55953772 - 55953823
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  55953772 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtgga 55953823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 1273353 - 1273404
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||||| ||||| || || |||||||||||||||||||||||||||||    
T  1273353 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgga 1273404  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 26788718 - 26788667
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||||| |||||||| || ||||||||||||||||| |||||||||||    
T  26788718 tgtgtgctttttaaattcaaccgttgatcaccaatcttaactgacacgtgga 26788667  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 30671960 - 30672041
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    |||||||| ||  |||||||||| ||||| ||||  ||||  |||| ||||||||||||||||||| ||| |||||||||||    
T  30671960 tatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaataacatgtggacaaggg 30672041  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 33377284 - 33377335
Alignment:
Q  233 tgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgga 284  Q
    |||||||||| ||||| || || |||||||||||||||||| ||||||||||    
T  33377284 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaacgacacgtgga 33377335  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 526614 - 526692
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaa 287  Q
    |||||||| ||  |||||||||  ||||| ||||  ||||| |||| ||||||||||||||||||||||  ||||||||    
T  526614 tatgttgtgagcccattgtatacttgtgtacttttcaaatttagcccttgatcaccaatcttaaatgacgtgtggacaa 526692  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 936391 - 936357
Alignment:
Q  256 ttgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    ||||||||||||||||||||||| |||||||||||    
T  936391 ttgatcaccaatcttaaatgacatgtggacaaggg 936357  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 15446609 - 15446643
Alignment:
Q  256 ttgatcaccaatcttaaatgacacgtggacaaggg 290  Q
    ||||||||||||||||||||||| |||||||||||    
T  15446609 ttgatcaccaatcttaaatgacatgtggacaaggg 15446643  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 29834328 - 29834402
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgg 283  Q
    |||||||| ||| |||||||||  ||||| ||||  ||||  |||| ||||||||||||||||||||||| ||||    
T  29834328 tatgttgtgagtccattgtatacttgtgtacttttcaaatatagcccttgatcaccaatcttaaatgacatgtgg 29834402  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 47606488 - 47606570
Alignment:
Q  202 atgatcctatgttgtaagttcattgtatatct-gtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtgg 283  Q
    |||||| |||||||| |||| |||||| || | ||||||||| ||||| || || ||||||||||||| ||| ||||||||||    
T  47606488 atgatcatatgttgtgagtttattgtaaattttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 47606570  T

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Target: scaffold0178 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 2160 - 2246
Alignment:
Q  209 tatgttgtaagttcattgtatatctgtgtgctttctaaattcagccattgatcaccaatcttaaatgacacgtggacaaggggttaa 295  Q
    |||||| | |||||||||||||| |||| ||| ||||||| || || ||||||| | ||||||| ||||||||||| || |||||||    
T  2160 tatgttttgagttcattgtatatatgtgcgctctctaaatccaacccttgatcatccatcttaagtgacacgtggataatgggttaa 2246  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 17123 - 17198
Alignment:
Q  257 tgatcaccaatcttaaatgacacgtggacaaggggttaacggaaaggaccacaatagtaaacgtcagaagaattat 332  Q
    ||||||||||||||||||||||| | |||| ||||||||  || ||||| | ||||||||| | ||||||| ||||    
T  17123 tgatcaccaatcttaaatgacacatagacatggggttaatagagaggactaaaatagtaaatgacagaagagttat 17198  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 458398 - 458436
Alignment:
Q  251 agccattgatcaccaatcttaaatgacacgtggacaagg 289  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  458398 agcccttgatcaccaatcttaaatgacatgtggacaagg 458436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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