View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5592-Insertion-1 (Length: 460)

Name: NF5592-Insertion-1
Description: NF5592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5592-Insertion-1
NF5592-Insertion-1
[»] scaffold0074 (2 HSPs)
scaffold0074 (48-460)||(50722-51134)
scaffold0074 (3-59)||(47304-47360)
[»] chr6 (16 HSPs)
chr6 (150-460)||(18994427-18994737)
chr6 (48-146)||(18994257-18994355)
chr6 (374-455)||(18990109-18990190)
chr6 (273-333)||(18985132-18985192)
chr6 (370-460)||(20235043-20235134)
chr6 (370-460)||(22129027-22129118)
chr6 (3-59)||(20086632-20086688)
chr6 (276-337)||(20082973-20083034)
chr6 (411-455)||(22210129-22210173)
chr6 (273-321)||(18978703-18978751)
chr6 (358-418)||(20083048-20083108)
chr6 (203-255)||(12423850-12423902)
chr6 (3-59)||(20128345-20128401)
chr6 (274-325)||(20234966-20235018)
chr6 (274-325)||(22128950-22129002)
chr6 (3-59)||(22204469-22204525)
[»] scaffold0007 (3 HSPs)
scaffold0007 (368-455)||(8287-8374)
scaffold0007 (273-340)||(8365-8431)
scaffold0007 (18-59)||(4822-4863)
[»] chr8 (2 HSPs)
chr8 (151-274)||(16215077-16215201)
chr8 (48-145)||(16214906-16215002)
[»] scaffold0264 (1 HSPs)
scaffold0264 (3-59)||(16581-16637)
[»] chr7 (5 HSPs)
chr7 (203-275)||(1979378-1979450)
chr7 (48-105)||(23629289-23629346)
chr7 (48-120)||(18774259-18774330)
chr7 (48-83)||(12264903-12264938)
chr7 (48-86)||(4813706-4813744)
[»] chr5 (1 HSPs)
chr5 (151-222)||(18800228-18800299)
[»] chr3 (1 HSPs)
chr3 (48-86)||(17397001-17397039)


Alignment Details
Target: scaffold0074 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 48 - 460
Target Start/End: Complemental strand, 51134 - 50722
Alignment:
Q  48 attgtacatgtgtagtcgtgtgagtggtccagaacagttgacctccaagctgttgatgcctctatggatcaataaatttagcagaaacaggaggcgtttc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  51134 attgtacatgtgtagtcgtgtgagtggtccagaacagttgacctccaagctgttgatgcctttatggatcaataaatttagcagaaaaaggaggcgtttc 51035  T
Q  148 cataaagagtgtggcgtccgttggtgagctaagtcagacgacccttgaaatggctgttgggaagctttgattccgtctgcgagtgatggcgtccgacttt 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51034 cataaagagtgtggcgtccgttggtgagctaagtcagacgacccttgaaatggctgttgggaagctttgattccgtctgcgagtgatggcgtccgacttt 50935  T
Q  248 gagttagtaggagtagttggcacttaatttcattgaaagtttccaataaatactttgcatttcttctattcatctttctaaacaaattcaatctcgctcc 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50934 gagttagtaggagtagttggcacttaatttcattgaaagtttccaataaatactttgcatttcttctattcatctttctaaacaaattcaatctcgctcc 50835  T
Q  348 aagtgtttcctcattaaccaaaatttaatcattaaagggtaaatgaggttattgggcacaatgcccttgtaaagcgtttacttatacatcatcaaaggta 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834 aagtgtttcctcattaaccaaaatttaatcattaaagggtaaatgaggttattgggcacaatgcccttgtaaagcgtttacttatacatcatcaaaggta 50735  T
Q  448 aattacattaatt 460  Q
    |||||||||||||    
T  50734 aattacattaatt 50722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 47304 - 47360
Alignment:
Q  3 caacaccacagtcaccacaggaaaccactctgattctgtctatggattgtacatgtg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47304 caacaccacagtcaccacaggaaaccactctgattctgtctatggattgttcatgtg 47360  T

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Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 150 - 460
Target Start/End: Original strand, 18994427 - 18994737
Alignment:
Q  150 taaagagtgtggcgtccgttggtgagctaagtcagacgacccttgaaatggctgttgggaagctttgattccgtctgcgagtgatggcgtccgactttga 249  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  18994427 taaagagtgtggcgtccattggtgagctaagtcagacgacccttgaaatggctattgggaagctttgattccgtctgcgaatgatggcgtccgactttga 18994526  T
Q  250 gttagtaggagtagttggcacttaatttcattgaaagtttccaataaatactttgcatttcttctattcatctttctaaacaaattcaatctcgctccaa 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  18994527 gttagtaggagtagttggcacttaatttcattgaaagtttccaataaatactttgcatttcttctatttatctttctaatcaaattcaatctcgctccaa 18994626  T
Q  350 gtgtttcctcattaaccaaaatttaatcattaaagggtaaatgaggttattgggcacaatgcccttgtaaagcgtttacttatacatcatcaaaggtaaa 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18994627 gtgtttcctcattaaccaaaatttaatcattaaagggtaaatgaggttattgggcacaatgcccttgtaaagcatttacttatacatcatcaaaggtaaa 18994726  T
Q  450 ttacattaatt 460  Q
    |||||||||||    
T  18994727 ttacattaatt 18994737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 18994257 - 18994355
Alignment:
Q  48 attgtacatgtgtagtcgtgtgagtggtccagaacagttgacctccaagctgttgatgcctctatggatcaataaatttagcagaaacaggaggcgttt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  18994257 attgtacatgtgtagtcgtgtgagtggtccagaacagttgacctctaagctattgatgcctttatggatcaataaatttagcagaaaaaggaggcgttt 18994355  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 18990109 - 18990190
Alignment:
Q  374 aatcattaaagggtaaatgaggttattgggcacaatgcccttgtaaagcgtttacttatacatcatcaaaggtaaattacat 455  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  18990109 aatcattaaagggtaaacgaagttattgggaacaatgcccttgtaaagcatttacttatacatcatgaaaggtaaattacat 18990190  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 18985132 - 18985192
Alignment:
Q  273 aatttcattgaaagtttccaataaatactttgcatttcttctattcatctttctaaacaaa 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18985132 aatttcattgaaagtttccaataaatactttgcatttcttctattcatctttctaaacaaa 18985192  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 370 - 460
Target Start/End: Original strand, 20235043 - 20235134
Alignment:
Q  370 atttaatcattaaagggtaaatgaggttattgggcacaatgcccttgtaaagcgtttacttatacatcatcaaa-ggtaaattacattaatt 460  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||  ||||||||||||||| || ||||||||||||||    
T  20235043 atttaatcatcaaagggtaaatgaggttattgggcacaatgcccttatagagcatttgattatacatcatcaaagggaaaattacattaatt 20235134  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 370 - 460
Target Start/End: Original strand, 22129027 - 22129118
Alignment:
Q  370 atttaatcattaaagggtaaatgaggttattgggcacaatgcccttgtaaagcgtttacttatacatcatcaaa-ggtaaattacattaatt 460  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||  ||||||||||||||| || ||||||||||||||    
T  22129027 atttaatcatcaaagggtaaatgaggttattgggcacaatgcccttatagagcatttgattatacatcatcaaagggaaaattacattaatt 22129118  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 20086688 - 20086632
Alignment:
Q  3 caacaccacagtcaccacaggaaaccactctgattctgtctatggattgtacatgtg 59  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  20086688 caacaccacagtcaccacaggagaccactctaattctgtctatggattgttcatgtg 20086632  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 20082973 - 20083034
Alignment:
Q  276 ttcattgaaagtttccaataaatactttgcatttcttctattcatctttctaaacaaattca 337  Q
    ||||||||||||||||| | |||  | |||||||||||||||||||||||||||||||||||    
T  20082973 ttcattgaaagtttccattgaatcttctgcatttcttctattcatctttctaaacaaattca 20083034  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 22210173 - 22210129
Alignment:
Q  411 cccttgtaaagcgtttacttatacatcatcaaaggtaaattacat 455  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  22210173 cccttgtaaagcatttacttatacatcatcaaaggtaaattacat 22210129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 18978703 - 18978751
Alignment:
Q  273 aatttcattgaaagtttccaataaatactttgcatttcttctattcatc 321  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  18978703 aatttcattgaaagtttccaatgaatcctttggatttcttctattcatc 18978751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 20083048 - 20083108
Alignment:
Q  358 tcattaaccaaaatttaatcattaaagggtaaatgaggttattgggcacaatgcccttgta 418  Q
    ||| |||||||||||| |||||||||||||| ||||||||||  || ||||||||||||||    
T  20083048 tcactaaccaaaatttcatcattaaagggtatatgaggttatatggaacaatgcccttgta 20083108  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 12423902 - 12423850
Alignment:
Q  203 gttgggaagctttgattccgtctgcgagtgatggcgtccgactttgagttagt 255  Q
    ||||||||||||||| |||||||||  ||||||||| | || |||||||||||    
T  12423902 gttgggaagctttgactccgtctgcaggtgatggcgcctgattttgagttagt 12423850  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 20128401 - 20128345
Alignment:
Q  3 caacaccacagtcaccacaggaaaccactctgattctgtctatggattgtacatgtg 59  Q
    ||||||||||||||| |    ||||| ||||||||||||||||||||||| ||||||    
T  20128401 caacaccacagtcactagtataaacccctctgattctgtctatggattgttcatgtg 20128345  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 20234966 - 20235018
Alignment:
Q  274 atttcattgaaagtttccaa-taaatactttgcatttcttctattcatctttc 325  Q
    |||||||||||||||||||| | |||   ||||||||||||||||||||||||    
T  20234966 atttcattgaaagtttccaaatgaatcacttgcatttcttctattcatctttc 20235018  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 22128950 - 22129002
Alignment:
Q  274 atttcattgaaagtttccaa-taaatactttgcatttcttctattcatctttc 325  Q
    |||||||||||||||||||| | |||   ||||||||||||||||||||||||    
T  22128950 atttcattgaaagtttccaaatgaatcacttgcatttcttctattcatctttc 22129002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 22204469 - 22204525
Alignment:
Q  3 caacaccacagtcaccacaggaaaccactctgattctgtctatggattgtacatgtg 59  Q
    ||||||||||||||| |    ||||| ||||||||||||||||||||||| ||||||    
T  22204469 caacaccacagtcactagtataaacccctctgattctgtctatggattgttcatgtg 22204525  T

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Target: scaffold0007 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 368 - 455
Target Start/End: Complemental strand, 8374 - 8287
Alignment:
Q  368 aaatttaatcattaaagggtaaatgaggttattgggcacaatgcccttgtaaagcgtttacttatacatcatcaaaggtaaattacat 455  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  8374 aaattcaatcattaaagggtaaatgaagttattgggaacaatgcccttgtaaagcatttacttatacatcatgaaaggtaaattacat 8287  T

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Target: scaffold0007; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 8431 - 8365
Alignment:
Q  273 aatttcattgaaagtttccaataaatactttgcatttcttctattcatctttctaaacaaattcaatc 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8431 aatttcattgaaagtttccaataaatactttgcatttcttctattcatctttct-aacaaattcaatc 8365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4822 - 4863
Alignment:
Q  18 cacaggaaaccactctgattctgtctatggattgtacatgtg 59  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  4822 cacaggaaacccctctgattctgtctatggattgttcatgtg 4863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 16215077 - 16215201
Alignment:
Q  151 aaagagtgtggcgtccgttggtgagctaagtcagacgacccttgaaatggct-gttgggaagctttgattccgtctgcgagtgatggcgtccgactttga 249  Q
    |||||||||||||| ||||| ||| |||||||||||| |||||||| ||  | ||| |||||||||| |||||||| |||||||||||| || ||||| |    
T  16215077 aaagagtgtggcgttcgttgatgatctaagtcagacggcccttgaagtgttttgttaggaagctttggttccgtcttcgagtgatggcgcccaactttaa 16215176  T
Q  250 gttagtaggagtagttggcacttaa 274  Q
    |||||| ||||||||||||||||||    
T  16215177 gttagtgggagtagttggcacttaa 16215201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 16214906 - 16215002
Alignment:
Q  48 attgtacatgtgtagtcgtgtgagtggtccagaacagttgacctccaagctgttgatgcctctatggatcaataaatttagcagaaacaggaggcgtt 145  Q
    ||||||||  ||||| |||||||||||||||||||||||| || |||||  |||||||||| ||||| |||||   ||||||| | | ||||||||||    
T  16214906 attgtacacatgtaggcgtgtgagtggtccagaacagttg-cccccaagtcgttgatgcctttatggctcaatggctttagcatagaaaggaggcgtt 16215002  T

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Target: scaffold0264 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 16637 - 16581
Alignment:
Q  3 caacaccacagtcaccacaggaaaccactctgattctgtctatggattgtacatgtg 59  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  16637 caacaccacagtcaccacaggaaacccctctgattctgtctatggattgttcatgtg 16581  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 1979378 - 1979450
Alignment:
Q  203 gttgggaagctttgattccgtctgcgagtgatggcgtccgactttgagttagtaggagtagttggcacttaat 275  Q
    ||||||||||||||||||||||  | |||||||||| |||||||||||||||| | | ||||||||| |||||    
T  1979378 gttgggaagctttgattccgtccactagtgatggcgcccgactttgagttagtggcaatagttggcatttaat 1979450  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 23629289 - 23629346
Alignment:
Q  48 attgtacatgtgtagtcgtgtgagtggtccagaacagttgacctccaagctgttgatg 105  Q
    ||||||||||||||||||||||||||||| |||||||||| |  |||||| |||||||    
T  23629289 attgtacatgtgtagtcgtgtgagtggtctagaacagttgcctcccaagccgttgatg 23629346  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 18774259 - 18774330
Alignment:
Q  48 attgtacatgtgtagtcgtgtgagtggtccagaacagttgacctccaagctgttgatgcctctatggatcaat 120  Q
    ||||||||||||||| ||||||||||||| |||||||||| || |||||  |||||||||| ||||| |||||    
T  18774259 attgtacatgtgtagccgtgtgagtggtcaagaacagttg-cccccaagtcgttgatgcctttatggctcaat 18774330  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 12264938 - 12264903
Alignment:
Q  48 attgtacatgtgtagtcgtgtgagtggtccagaaca 83  Q
    |||||||| |||||||||||||||||||||||||||    
T  12264938 attgtacacgtgtagtcgtgtgagtggtccagaaca 12264903  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 4813744 - 4813706
Alignment:
Q  48 attgtacatgtgtagtcgtgtgagtggtccagaacagtt 86  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  4813744 attgtacatgtgtagtcatgtgagtggtccagcacagtt 4813706  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 18800228 - 18800299
Alignment:
Q  151 aaagagtgtggcgtccgttggtgagctaagtcagacgacccttgaaatggctgttgggaagctttgattccg 222  Q
    ||||||||||| |||| ||| ||||||||||| |||| |||||||| ||  |||||| ||||||||||||||    
T  18800228 aaagagtgtggtgtccattgatgagctaagtcggacggcccttgaagtgtttgttggtaagctttgattccg 18800299  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 17397001 - 17397039
Alignment:
Q  48 attgtacatgtgtagtcgtgtgagtggtccagaacagtt 86  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  17397001 attgtacatgtgtagtcgtgtgagtggtctagaacagtt 17397039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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