View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5592-Insertion-2 (Length: 724)

Name: NF5592-Insertion-2
Description: NF5592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5592-Insertion-2
NF5592-Insertion-2
[»] chr3 (3 HSPs)
chr3 (437-724)||(10368838-10369125)
chr3 (8-185)||(10368369-10368546)
chr3 (326-423)||(10368687-10368784)
[»] chr8 (2 HSPs)
chr8 (351-419)||(11659585-11659653)
chr8 (351-419)||(11668754-11668822)
[»] chr4 (1 HSPs)
chr4 (334-389)||(53239235-53239290)
[»] chr1 (1 HSPs)
chr1 (334-389)||(2170350-2170405)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 437 - 724
Target Start/End: Original strand, 10368838 - 10369125
Alignment:
Q  437 gcgtgtgtgtgtcttaaggaacaattgtggagtatagattagccaatttttaatttatcttagtttaacaatacgaaggagaaaaagagagcaatttatc 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368838 gcgtgtgtgtgtcttaaggaacaattgtggagtatagattagccaatttttaatttatcttagtttaacaatacgaaggagaaaaagagagcaatttatc 10368937  T
Q  537 tggnnnnnnnggagatcgtgttatggtttatcttagtctaaatgaactttttaaccttcaattgcttttaatacgaatannnnnnnnnaccgtatttttc 636  Q
    |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||    
T  10368938 tggaaaaaaaggagatcgtgttatggtttatcttagtctaaatgaactttttaaccttcaattgcttttaatacgaatatttttttttaccgtatttttc 10369037  T
Q  637 tctttcaatcattcaatttccatacatggtcatcaatgatatagtagaagcatatttattggtgaaaatgaaaatcattatggatacg 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10369038 tctttcaatcattcaatttccatacatggtcatcaatgatatagtagaagcatatttattggtgaaaatgaaaatcattatggatacg 10369125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 10368369 - 10368546
Alignment:
Q  8 agcatgagcctatataaatgtcaaggctattttacttttcttgagttcttagtttgcaacagttatgtttcatctcattaacaataatttttaattctac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368369 agcatgagcctatataaatgtcaaggctattttacttttcttgagttcttagtttgcaacagttatgtttcatctcattaacaataatttttaattctac 10368468  T
Q  108 gagagctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368469 gagagctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg 10368546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 326 - 423
Target Start/End: Original strand, 10368687 - 10368784
Alignment:
Q  326 caacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccct 423  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368687 caacccgtactgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccct 10368784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 11659585 - 11659653
Alignment:
Q  351 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcac 419  Q
    |||||||||||| ||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||    
T  11659585 attgaaaaggacagcaagaacaagaaggaggctactatttcaaggtatgggtttgcatttcgatctcac 11659653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 11668754 - 11668822
Alignment:
Q  351 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcac 419  Q
    |||||||||||| |||| ||||||||||| | ||||||||| |||||| ||||||||||||||||||||    
T  11668754 attgaaaaggacagcaaaaagaagaaggaggctactatttcaaggtatcggtttgcatttcgatctcac 11668822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 53239235 - 53239290
Alignment:
Q  334 gctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 389  Q
    |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  53239235 gctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 53239290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 2170350 - 2170405
Alignment:
Q  334 gctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 389  Q
    |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  2170350 gctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 2170405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University