View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5592-Insertion-3 (Length: 1096)

Name: NF5592-Insertion-3
Description: NF5592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5592-Insertion-3
NF5592-Insertion-3
[»] chr5 (1 HSPs)
chr5 (573-807)||(19569150-19569394)
[»] chr2 (3 HSPs)
chr2 (87-421)||(1573785-1574109)
chr2 (576-655)||(26315750-26315829)
chr2 (576-649)||(43110864-43110937)
[»] chr8 (5 HSPs)
chr8 (573-672)||(5268916-5269015)
chr8 (573-662)||(5249681-5249770)
chr8 (576-655)||(5272785-5272864)
chr8 (576-658)||(5276753-5276835)
chr8 (429-486)||(5268692-5268749)
[»] chr3 (2 HSPs)
chr3 (8-88)||(8869079-8869157)
chr3 (8-50)||(11193793-11193835)
[»] chr6 (1 HSPs)
chr6 (155-200)||(6899229-6899273)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 573 - 807
Target Start/End: Original strand, 19569150 - 19569394
Alignment:
Q  573 gataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcctactatggctttcaatt 672  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  19569150 gataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctttcaatt 19569249  T
Q  673 tcaattctctaatggattgtgattaactctggtgtggagaactaaacgggggattaatttcaaattg----------tagtgatgcattttgtgaacaga 762  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  19569250 tcaattctctaatggattgtgattagtgctggtgtggagaactaaacgggggattaatttcaaattgtagtgatgcatagtgatgcattttgtgaacaga 19569349  T
Q  763 aaaggggaaaactggagatagcaaaaacgaaatgaaatagacaaa 807  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  19569350 aaaggggaaaactggaaatagcaaaaacgaaatgaaatagacaaa 19569394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 87 - 421
Target Start/End: Original strand, 1573785 - 1574109
Alignment:
Q  87 tgttaaatttttcttcagttttctcctgtgcaatctcagcctttaannnnnnnngttaagacagatcaacggctaccagtaaaacaaattaaatcagatt 186  Q
    |||||| ||||||| |||||||||||| |||||||||||||||| |         | |||||| ||  |||||||||| |||||  ||||||||||||||    
T  1573785 tgttaagtttttctccagttttctcctatgcaatctcagcctttcattttttt--taaagacaaatggacggctaccaataaaatcaattaaatcagatt 1573882  T
Q  187 ttgtctctttccttatacatccctcacgtatc-ccccttcttcacaaactatttttctacttcattctctacacaggttcgcagcagtgtcctccttcct 285  Q
    ||||||||||||||     ||||||     || |||||||||| ||||| |||||||| |||||||| |||||||||||| ||    |||||| ||||||    
T  1573883 ttgtctctttcctt-----tccctcgtcactcaccccttcttcgcaaaccatttttctgcttcattccctacacaggttcaca----tgtccttcttcct 1573973  T
Q  286 tctctattttcgcttttccatccttctcccattctcatagtaaattttctgatattgtataacatggatttccattttttattattcaaatgaacctaat 385  Q
    ||||||||||| | ||||| ||||||||||||||||  |||||||||||||||||||| ||| |||| ||||||||| ||||||||||||| ||||||||    
T  1573974 tctctattttcccctttccttccttctcccattctctaagtaaattttctgatattgtttaagatggctttccatttattattattcaaattaacctaat 1574073  T
Q  386 ttcaaatcagcaacaaagaaatcaattaatcagatt 421  Q
    ||||||||| ||| ||||||||||||||||||||||    
T  1574074 ttcaaatcaacaagaaagaaatcaattaatcagatt 1574109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 576 - 655
Target Start/End: Complemental strand, 26315829 - 26315750
Alignment:
Q  576 aaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcc 655  Q
    |||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  26315829 aaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcc 26315750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 576 - 649
Target Start/End: Complemental strand, 43110937 - 43110864
Alignment:
Q  576 aaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaact 649  Q
    ||||||||| |||| ||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| ||||    
T  43110937 aaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaact 43110864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 4e-44; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 573 - 672
Target Start/End: Original strand, 5268916 - 5269015
Alignment:
Q  573 gataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcctactatggctttcaatt 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  5268916 gataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaatt 5269015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 573 - 662
Target Start/End: Original strand, 5249681 - 5249770
Alignment:
Q  573 gataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcctactatg 662  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||| ||||||    
T  5249681 gataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccactatg 5249770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 576 - 655
Target Start/End: Complemental strand, 5272864 - 5272785
Alignment:
Q  576 aaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcc 655  Q
    |||||||| |||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||| ||||||||    
T  5272864 aaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcc 5272785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 576 - 658
Target Start/End: Complemental strand, 5276835 - 5276753
Alignment:
Q  576 aaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcctac 658  Q
    ||||| || ||||||||||| |||||||||||| |  |||||||||| |||||||| ||||||||||||||||||||||||||    
T  5276835 aaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcctac 5276753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 429 - 486
Target Start/End: Original strand, 5268692 - 5268749
Alignment:
Q  429 actaaattaccctgttttcgttggaccgtttcacatcatatttttccgctataaatac 486  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  5268692 actaaattcccctgttttcgttgtaccgtttctcatcatatttttccgctataaatac 5268749  T

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Target: chr3 (Bit Score: 58; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 8869157 - 8869079
Alignment:
Q  8 ggaaccctagacattctttttaaaattcctacagcgttccaaccaataacactaggctacaccttaaattgtacaaatttg 88  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  8869157 ggaaccctagacattctttttaaaactcctagagcgttccaactaataacactaggctacacctt--attgtacaaatttg 8869079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 11193835 - 11193793
Alignment:
Q  8 ggaaccctagacattctttttaaaattcctacagcgttccaac 50  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||    
T  11193835 ggaaccctaaacattctttttaaaactcctacagcattccaac 11193793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 6899273 - 6899229
Alignment:
Q  155 acggctaccagtaaaacaaattaaatcagattttgtctctttcctt 200  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  6899273 acggctaccaataaaccaa-ttaaatcagattttgtctctttcctt 6899229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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