View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5592_high_2 (Length: 359)
Name: NF5592_high_2
Description: NF5592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5592_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 43104284 - 43103952
Alignment:
| Q |
18 |
aagagtaggaagaagctgtggacattgcaagtgggaagatgatacaacnnnnnnnnnnnnggacatcatatatacagaactcatatacaaaatgaatatg |
117 |
Q |
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| T |
43104284 |
aagagtaagaagaagctgtggacattgcaagtgggaagatgatacaactttttattttttggacatcatatatacagcacttatatgccaaatgaatatg |
43104185 |
T |
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| Q |
118 |
gatgagattatggttgtttatcaagcagacatccattttagttttggatgtgtgaaacaatgtcactttaatctttaaatgtattgaaattgcaatcata |
217 |
Q |
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| T |
43104184 |
gatgagattatggttgtttatcaagcagacatccattttagttttggatgtgtgaaacaatgtcactttaatctttaaatgtattgaaattgcaatcata |
43104085 |
T |
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| Q |
218 |
tccaaagataatggtaagtaataacaacttatcacctattcaatcaccaaaatgattgtttgcatgtttgtttggccnnnnnnnngttcctttggcataa |
317 |
Q |
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| T |
43104084 |
tccaaagataatggtaagtgataacaacttatcacctattcaatcaccaaaatgattgtttgcatgtttgtttggccttttttttgttcctttggcataa |
43103985 |
T |
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| Q |
318 |
gttgtggtcaaaacttatagtccattacatttt |
350 |
Q |
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| T |
43103984 |
gttgtggtcaaaacttatagtccattacatttt |
43103952 |
T |
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