View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5592_low_1 (Length: 414)
Name: NF5592_low_1
Description: NF5592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5592_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 22484427 - 22484033
Alignment:
| Q |
8 |
catcatcacttcttaattaaccatctctatccttcactttcctttctttcatttccttattcatcatatatacacaaaaaaccataacacnnnnnnnnnn |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22484427 |
catcatcacttcttaattaaccatctctatccttcactttcctttctttcatttccttattcatcatatatacacaaaaa-ccataacactttttttttt |
22484329 |
T |
|
| Q |
108 |
-----atctcttccttcaaactaagttgattaagaagtgttttgtatggggatggattcttctagtggacaacaacaggtgaaatatttatttcatatca |
202 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22484328 |
tttttatctctaccttcaaactaagttgattaagaagtgttt-gtatggggatggattcttctagtgggcaacaacaggtgaaatatttatttcatatca |
22484230 |
T |
|
| Q |
203 |
tatcatatataattatcatgcatgtagtcatgtaatatttattaacgtgacttatttgattcttgccttccatctttgtccttcaagaatttttagtact |
302 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22484229 |
tat-atatataattatcatgcatgtagtcatgtaatatttattaacgtgacttatttgattcttgccttccatctttgtccttcaagaatttttagt--- |
22484134 |
T |
|
| Q |
303 |
atactactttgaagaatgagaaaggaacatattattttccttaannnnnnnnnncttctttgaagaacaccctttggaagaaatataattagtaaagcta |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22484133 |
--actactttgaagaatgagaaaggaacatattattttcctt-attttttttttcttctttgaagaacaccctttggaagaaatataattagtaaagcta |
22484037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University