View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5593-Insertion-1 (Length: 216)
Name: NF5593-Insertion-1
Description: NF5593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5593-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 53866755 - 53866564
Alignment:
| Q |
7 |
aggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaacct |
106 |
Q |
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| T |
53866755 |
aggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaacct |
53866656 |
T |
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| Q |
107 |
tttaagcatagtccatggtatctcacgaaacaaaattttcatgaaatcagcatggagagattgaaatcctgtgaaagtaagtccacgttcat |
198 |
Q |
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| T |
53866655 |
tttaagcatagtccatggtatctcacgaaacaaaattttcatgaaatcagcatggagagattgaaatcctgtgaaagtaagtccacgttcat |
53866564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 33 - 198
Target Start/End: Original strand, 54160566 - 54160731
Alignment:
| Q |
33 |
acctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaaccttttaagcatagtccatggtatctcac |
132 |
Q |
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| T |
54160566 |
acctgatcgggagcacgtgtcagaggcggaattagatgatcagcaagtctgatatcatccatatacccaaactttcttagcatagcccacggtacctccc |
54160665 |
T |
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| Q |
133 |
gaaacaaaattttcatgaaatcagcatggagagattgaaatcctgtgaaagtaagtccacgttcat |
198 |
Q |
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| | | |||||| |||||||||| || | |||||||||||||| |||||||||||| |||||| |
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| T |
54160666 |
ggtgccatattttcttgaaatcagcgtgtaaagattgaaatcctgctaaagtaagtccatgttcat |
54160731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 17882600 - 17882712
Alignment:
| Q |
11 |
cacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaacctttta |
110 |
Q |
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|||| ||||| |||||||||||||||||||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||| | |
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| T |
17882600 |
cacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctg |
17882699 |
T |
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| Q |
111 |
agcatagtccatg |
123 |
Q |
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|||| |||||||| |
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| T |
17882700 |
agcacagtccatg |
17882712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 14775227 - 14775320
Alignment:
| Q |
11 |
cacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaac |
104 |
Q |
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| T |
14775227 |
cacaattcatctgaaaagaaacacctgatcaggtgcacgtttcaaaggtggaatcaaattatcagcaagcttgatatcatcattatatccaaac |
14775320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 15017292 - 15017406
Alignment:
| Q |
9 |
gccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaaccttt |
108 |
Q |
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|||||| || || |||||||||||||||||||||| ||| | |||||| ||||| || || | ||||||| |||| ||||| ||||||||||||| ||| |
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| T |
15017292 |
gccacaatttatctcaaaagaaacacctgatcaggtgcaagcttcaaaggcggaaataaatcagcagcaagcttgacatcataattatatccaaactttt |
15017391 |
T |
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| Q |
109 |
taagcatagtccatg |
123 |
Q |
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| |||| |||||||| |
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| T |
15017392 |
ttagcacagtccatg |
15017406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 15050063 - 15050156
Alignment:
| Q |
9 |
gccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaac |
104 |
Q |
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|||||| || || |||||||||| ||||||||||| || |||||||| |||| || || ||||| ||| |||||||||| ||||||||||||| |
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| T |
15050063 |
gccacaatttatctcaaaagaaagacctgatcaggtgc--gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaac |
15050156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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