View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5593_low_1 (Length: 453)
Name: NF5593_low_1
Description: NF5593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5593_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 28650874 - 28651296
Alignment:
| Q |
18 |
ggtagttcatcaacattgggaggatgaggtgcccagaaaaatgcaagtgtgtccctccactcagcagatcgatcttcggaaagagtaaaattggaaagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28650874 |
ggtagttcatcaacattgggaggatgaggtgcccagaaaaatgcaagtgtgtccctccactcagcagattgatcttcggaaagagtaaaattggaaagat |
28650973 |
T |
|
| Q |
118 |
aaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28650974 |
aaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatgcaaaac |
28651073 |
T |
|
| Q |
218 |
atgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28651074 |
atgaactggaattccatgatttattacttgaaagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatca |
28651173 |
T |
|
| Q |
318 |
tggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcgtgatagaacatgcgtg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28651174 |
tggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcacaatagaacatgcgtg |
28651273 |
T |
|
| Q |
418 |
gaacttttgttactccatattct |
440 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
28651274 |
gaacttttgttactccattttct |
28651296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 28642013 - 28642435
Alignment:
| Q |
18 |
ggtagttcatcaacattgggaggatgaggtgcccagaaaaatgcaagtgtgtccctccactcagcagatcgatcttcggaaagagtaaaattggaaagat |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28642013 |
ggtagttcatcaacattgggagggtgaggtgcccagaaaaatgcaagtgtgtccctccactcagcagattgatcttcggaaagagtaaaattggaaagat |
28642112 |
T |
|
| Q |
118 |
aaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28642113 |
aaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaac |
28642212 |
T |
|
| Q |
218 |
atgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28642213 |
atgaactggaattccatgatttattacttgaaagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatca |
28642312 |
T |
|
| Q |
318 |
tggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcgtgatagaacatgcgtg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| ||||| | ||| | ||| |||||| ||||||||| |||||||||| ||| |
|
|
| T |
28642313 |
tggattccttttaagtcaattgtagggatacttagctttgaatttgattcattcactgaaacatcattgatactagattgttcacaatagaacatgtgtg |
28642412 |
T |
|
| Q |
418 |
gaacttttgttactccatattct |
440 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
28642413 |
gaacttttgttactccattttct |
28642435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 28670596 - 28671018
Alignment:
| Q |
18 |
ggtagttcatcaacattgggaggatgaggtgcccagaaaaatgcaagtgtgtccctccactcagcagatcgatcttcggaaagagtaaaattggaaagat |
117 |
Q |
| |
|
||||||||||| | || ||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| | | ||||||||||||||||||| |
|
|
| T |
28670596 |
ggtagttcatcggctttaggaggatcgggtgcccagaaaaatgcaagtgtgtccctccaatcagcagattggtctaggtagagagtaaaattggaaagat |
28670695 |
T |
|
| Q |
118 |
aaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaac |
217 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||| ||||||||||| | ||| ||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28670696 |
aaacaacttttttggtaagatcacgggtgtagtactccttcctcaccttggcatcttgttggtgaaatctacaagttccattgatcatctcatccaaaat |
28670795 |
T |
|
| Q |
218 |
atgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatca |
317 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
28670796 |
ctgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcatttcgaacttttcttacaacttcatctctcaaaacaggatcatca |
28670895 |
T |
|
| Q |
318 |
tggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcgtgatagaacatgcgtg |
417 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||| ||||| | ||| ||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
28670896 |
tggattcctgttaagtcaattgtagggacactaagctttgaatttgattcatttactgaaccatgattgatattagattgttcacaatagaacatgcgtg |
28670995 |
T |
|
| Q |
418 |
gaacttttgttactccatattct |
440 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
28670996 |
gaacttttgttactccattttct |
28671018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 28674740 - 28675162
Alignment:
| Q |
18 |
ggtagttcatcaacattgggaggatgaggtgcccagaaaaatgcaagtgtgtccctccactcagcagatcgatcttcggaaagagtaaaattggaaagat |
117 |
Q |
| |
|
|||||||| ||| | || || ||||||||| |||||||||||||||||||||||||||| ||||||||| | |||| | |||||||||||||||| |||| |
|
|
| T |
28674740 |
ggtagttcttcagcttttgggggatgaggttcccagaaaaatgcaagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggagagat |
28674839 |
T |
|
| Q |
118 |
aaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaac |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |||||| |||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28674840 |
aaacaacttttttggtgagatcacgggtgtagtactccttcctcgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaat |
28674939 |
T |
|
| Q |
218 |
atgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatca |
317 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||| |
|
|
| T |
28674940 |
atgtgttggaattccatgatttatcacttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcg |
28675039 |
T |
|
| Q |
318 |
tggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcgtgatagaacatgcgtg |
417 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||| |||||||| || || ||||||| ||||||||| || |||||| |||| |
|
|
| T |
28675040 |
tggattcctgttaagtcaattgtagggatgctaagctttaaatttgattcactgattgagagatcattgatattagattgttcacaatggaacatacgtg |
28675139 |
T |
|
| Q |
418 |
gaacttttgttactccatattct |
440 |
Q |
| |
|
|||||||||| || |||| |||| |
|
|
| T |
28675140 |
gaacttttgtgacaccattttct |
28675162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 136 - 351
Target Start/End: Original strand, 28691334 - 28691549
Alignment:
| Q |
136 |
gatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgaactggaattccatg |
235 |
Q |
| |
|
||||||| ||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
28691334 |
gatcacgtgtgtaatactctttccttaccataacatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgagctgaaattccatg |
28691433 |
T |
|
| Q |
236 |
atttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggattccttttaagtca |
335 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||| || ||||||| |||||||||||||| || ||||||||||||||||| ||| |||| |
|
|
| T |
28691434 |
atttattacttgaaagaatccccacttctcacatgcattttcaacttttctcacagcttcatctctcaaaacaagatcatcatggattcctgttaggtca |
28691533 |
T |
|
| Q |
336 |
attgtagggatactaa |
351 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28691534 |
attgtagggatactaa |
28691549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 97 - 362
Target Start/End: Original strand, 28696180 - 28696445
Alignment:
| Q |
97 |
aaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcc |
196 |
Q |
| |
|
||||| || |||| |||| |||||||||||| || || |||| | || ||||||||||| |||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
28696180 |
aaagactataattagaaacataaacaactttcttgttgggatcgcatgtataatactcttttctcaccttggcatcttgttgatgaaatctacaagttcc |
28696279 |
T |
|
| Q |
197 |
tttgatcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttca |
296 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||| |
|
|
| T |
28696280 |
tttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccaattctcacttgcattttgaacttttctcacaacttca |
28696379 |
T |
|
| Q |
297 |
tctctcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggattt |
362 |
Q |
| |
|
||| ||||| || |||||| |||||||||| ||| |||||||| |||||||| ||||||| |||| |
|
|
| T |
28696380 |
tctttcaaaacaagatcattatggattcctgttaggtcaattggtgggatacttagctttgaattt |
28696445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 28717546 - 28717651
Alignment:
| Q |
145 |
tgtaatactctttcctcaccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgaactggaattccatgatttattac |
244 |
Q |
| |
|
|||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
28717546 |
tgtaatactctttccttaccctaacatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgagttgaaattccatgatttattac |
28717645 |
T |
|
| Q |
245 |
ttgaaa |
250 |
Q |
| |
|
|||||| |
|
|
| T |
28717646 |
ttgaaa |
28717651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 368
Target Start/End: Original strand, 28741514 - 28741621
Alignment:
| Q |
261 |
ttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggat |
360 |
Q |
| |
|
||||||| || ||||| || || |||||||||| |||||||||| || ||||||||||||||||| ||| |||||| || ||||||||| ||||| || |
|
|
| T |
28741514 |
ttctcacatgaattttgaacttttctcacaactgtatctctcaaaacaagatcatcatggattcctggtaaatcaattctacggatactaatctttgaat |
28741613 |
T |
|
| Q |
361 |
ttaattca |
368 |
Q |
| |
|
|| ||||| |
|
|
| T |
28741614 |
ttcattca |
28741621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 28733368 - 28733457
Alignment:
| Q |
307 |
caggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagatt |
396 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |||||||||||| ||||| |||| ||||| || ||| | ||| |||||||| ||||| |
|
|
| T |
28733368 |
caggatcatcatggattcctggtaaatcaattctagggatactaatctttgaattttattcattgactgaaacatcgttgatattagatt |
28733457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 41238559 - 41238469
Alignment:
| Q |
174 |
tgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttct |
264 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||| || ||||| || |||||||| |||| |
|
|
| T |
41238559 |
tgttcatgaaatctacaaattccattgatcatctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatccccagttct |
41238469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 33769111 - 33769169
Alignment:
| Q |
201 |
atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatcccca |
259 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||| || |||||||| |||||||| |
|
|
| T |
33769111 |
atcatctcatccaaaacaataaccggaataccatgattaatcacttgaaaaaatcccca |
33769169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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