View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594-Insertion-2 (Length: 1076)
Name: NF5594-Insertion-2
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 486 - 960
Target Start/End: Complemental strand, 30523629 - 30523154
Alignment:
| Q |
486 |
cagttcaccttcaacgttgcacttctatcaatttttggaaaagatgaaattctatatagagaagatctaaaaagatgttactacacacttgagaaagggt |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30523629 |
cagttcaccttcaacgttgcacttctatcaatttttggaaaagatgaaattctatatagagaagatctaaaaagatgttactacacacttgagaaagggt |
30523530 |
T |
|
| Q |
586 |
acaattcaatgccaataaacctaccaggaacactatttcacaaggcaatgaaagcaaggaaagagcttgcacagatcttagaacaaatcatctcaacaag |
685 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30523529 |
acaattcaatgccaataaacctaccaggaacactatttcacaaggcaatgaaagcaaggaaagagcttgcacagatcttagaacaaatcatctcaacaag |
30523430 |
T |
|
| Q |
686 |
gaggtgcaaaaagcaagtttacaatgatttattagcttctttcatggatgagaaagcaggacttagtgatgaacaaatatcagataatatcattggtgtt |
785 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30523429 |
gaggtgcaaaaagcaagtttacaatgatttattagcttctttcatggatgagaaagcaggacttagtgatgaacaaatatcagataatatcattggtgtt |
30523330 |
T |
|
| Q |
786 |
atttttgctgctcgtgacacaactgctagtgtgcttacgtggattgtgaagtaccttggtgaaaatcctagtgtccttgaatcagtcacagtaagtatct |
885 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30523329 |
atttttgctgctcgtgacacaactgctagtgtgcttacgtggattgtgaagtaccttggtgaaaatcctagtgtccttgaatcagtcacagtaagtatct |
30523230 |
T |
|
| Q |
886 |
gggtcctaccttttatccttctaatcattggc-aaatttgatttttagtaccaaaaatcatttcatttgtttttat |
960 |
Q |
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| T |
30523229 |
gggtcctaccttttatccttctaatcattggcaaaatttgatttttagtaccaaaaatcatttcatttgtttttat |
30523154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 30524107 - 30523819
Alignment:
| Q |
8 |
caagtctcacattttaggttgtccttgtgtgatgatttcaagtccagaagcagcaaaatttgtgttaaacaaatctcaacttttcaaaccaacatttcca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30524107 |
caagtctcacattttaggttgtccttgtgtgatgatttcaagtccagaagcagcaaaatttgtgttaaacaaatctcaacttttcaaaccaacatttcca |
30524008 |
T |
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| Q |
108 |
gctagcaaagaaaggatgttagggaaacaagcaattttctttcatcaaggaaattatcatgctaacctaagaagacttgttcttcgttccttcatgcctg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30524007 |
gctagcaaagaaaggatgttagggaaacaagcaattttctttcatcaaggaaattatcatgctaacctaagaagacttgttcttcgttctttcatgcctg |
30523908 |
T |
|
| Q |
208 |
aagccatcaaaagcattgttcctaatattgaatccattgcacaaacttgcctcaaatcatgggatggaaatttaatcaccacttacctt |
296 |
Q |
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| T |
30523907 |
aagccatcaaaagcattgttcctaatattgaatccattgcacaaacttgcctcaaatcatgggatggaaatttaatcaccacttacctt |
30523819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 8e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 486 - 871
Target Start/End: Original strand, 10423352 - 10423737
Alignment:
| Q |
486 |
cagttcaccttcaacgttgcacttctatcaatttttggaaaagatgaaattctatatagagaagatctaaaaagatgttactacacacttgagaaagggt |
585 |
Q |
| |
|
|||||||| ||||||||||| || || ||||||||||||||||||||||||| || |||| | ||||| ||||||||||| || || ||||||| |
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| T |
10423352 |
cagttcacattcaacgttgctctactttcaatttttggaaaagatgaaattcactaccgagagcaattaaaacagtgttactacactctagaaaaagggt |
10423451 |
T |
|
| Q |
586 |
acaattcaatgccaataaacctaccaggaacactatttcacaaggcaatgaaagcaaggaaagagcttgcacagatcttagaacaaatcatctcaacaag |
685 |
Q |
| |
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|||||||||||||||| || || ||||||||||| || || |||||||||||||| || ||||| |||||||||||| ||| ||||| ||||||| || |
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| T |
10423452 |
acaattcaatgccaattaatcttccaggaacactcttccataaggcaatgaaagctagaaaagaacttgcacagatcctagctcaaataatctcaagtag |
10423551 |
T |
|
| Q |
686 |
gag-gtgcaaaaagcaagtttacaatgatttattagcttctttcatggatgagaaagcaggacttagtgatgaacaaatatcagataatatcattggtgt |
784 |
Q |
| |
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|| | | | |||| ||| ||||| ||||| |||| ||| ||||||||||| ||| ||||||| ||||||||||||||| |||||||| | ||||| || |
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| T |
10423552 |
aagagagaagaaag-aagaatacaaagatttgttaggttcattcatggatgaaaaatcaggactaagtgatgaacaaatagcagataatgtaattggagt |
10423650 |
T |
|
| Q |
785 |
tatttttgctgctcgtgacacaactgctagtgtgcttacgtggattgtgaagtaccttggtgaaaatcctagtgtccttgaatcagt |
871 |
Q |
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| T |
10423651 |
tatttttgcagctcgtgataccacagctagtgtgcttacgtggattgttaagtaccttggtgaaaatatcagtgtcctagaatcagt |
10423737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 10422882 - 10423121
Alignment:
| Q |
8 |
caagtctcacattttaggttgtccttgtgtgatgatttcaagtccagaagcagcaaaatttgtgttaaacaaatctcaacttttcaaaccaacatttcca |
107 |
Q |
| |
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||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||| | || ||| ||||||||||||| |||||||| || |
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| T |
10422882 |
caagtctcacattttgggatgtccatgtgtgatgatttcaagtcctgaagcagcaaaatttgtgctgaataaagctcaacttttcaagccaacattccct |
10422981 |
T |
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| Q |
108 |
gctagcaaagaaaggatgttagggaaacaagcaattttctttcatcaaggaaattatcatgctaacctaagaagacttgttcttcgttccttcatgcctg |
207 |
Q |
| |
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||||||||||| |||||||| || |||||||| || || |||||||||||| | ||||||||||| ||||||||||||||||||| | |||||||| | |
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| T |
10422982 |
gctagcaaagagaggatgttgggaaaacaagctatcttttttcatcaaggagagtatcatgctaatttaagaagacttgttcttcgcacgttcatgccgg |
10423081 |
T |
|
| Q |
208 |
aagccatcaaaagcattgttcctaatattgaatccattgc |
247 |
Q |
| |
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|||||||| || |||||||||| | |||||||||||||| |
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| T |
10423082 |
tagccatcagaaacattgttcctgacattgaatccattgc |
10423121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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