View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5594-Insertion-3 (Length: 1030)

Name: NF5594-Insertion-3
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5594-Insertion-3
NF5594-Insertion-3
[»] scaffold0097 (1 HSPs)
scaffold0097 (23-101)||(16094-16172)
[»] chr2 (6 HSPs)
chr2 (23-101)||(20712255-20712333)
chr2 (26-125)||(25698754-25698853)
chr2 (23-117)||(21020994-21021087)
chr2 (23-76)||(20699211-20699264)
chr2 (31-77)||(20967948-20967994)
chr2 (328-402)||(20976152-20976225)
[»] chr7 (9 HSPs)
chr7 (23-63)||(19645455-19645495)
chr7 (22-63)||(20133097-20133138)
chr7 (23-64)||(22524939-22524980)
chr7 (22-67)||(29872021-29872066)
chr7 (23-63)||(19325748-19325788)
chr7 (24-56)||(20456761-20456793)
chr7 (23-64)||(20057831-20057872)
chr7 (23-64)||(21218473-21218514)
chr7 (22-67)||(29881564-29881609)
[»] chr4 (1 HSPs)
chr4 (23-67)||(53775099-53775143)
[»] chr8 (1 HSPs)
chr8 (23-66)||(27618725-27618768)
[»] scaffold0649 (1 HSPs)
scaffold0649 (23-64)||(5693-5734)
[»] scaffold0128 (1 HSPs)
scaffold0128 (23-64)||(4401-4442)
[»] chr5 (3 HSPs)
chr5 (23-64)||(23087052-23087093)
chr5 (23-64)||(29597332-29597373)
chr5 (23-64)||(42298375-42298416)


Alignment Details
Target: scaffold0097 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 16172 - 16094
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttcctcatatgatttacttaattgaatttttatgttagtt 101  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  16172 attatgtcgaaagcttggtttcaacttgttgaaagtaagttcctcttatgatttacttgtttgaatttttatgctagtt 16094  T

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Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 20712333 - 20712255
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttcctcatatgatttacttaattgaatttttatgttagtt 101  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  20712333 attatgtcgaaagcttggtttcaacttgttgaaagtaagttcctcttatgatttacttgtttgaatttttatgctagtt 20712255  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 25698754 - 25698853
Alignment:
Q  26 atgttgaaagtttggtttcaacttgttgaaagtaagttcctcatatgatttacttaattgaatttttatgttagttcatccatgttgtttaaagccttgt 125  Q
    ||||||||||||||||||||||| |||   |||||||||||| ||| |||| | |  ||||||||||||||||||||| ||||||||||||| |||||||    
T  25698754 atgttgaaagtttggtttcaactggttccgagtaagttcctcttatcatttgcgtgtttgaatttttatgttagttcaaccatgttgtttaatgccttgt 25698853  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 21021087 - 21020994
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttcctcatatgatttacttaattgaatttttatgttagttcatccatgttgtttaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || |||||||||  || ||| ||| ||||||||||| |||||| |||||    
T  21021087 attatgttgaaagtttggtttcaacttgttgaaagtaagttctttttacgatttactt-tttcaatatttttgttagttcattcatgttttttaa 21020994  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 20699264 - 20699211
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttcctcatatgattt 76  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  20699264 attatgttgaaagtttagtttcaactttttgaaagtaagttcctcttatgattt 20699211  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 20967948 - 20967994
Alignment:
Q  31 gaaagtttggtttcaacttgttgaaagtaagttcctcatatgattta 77  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||    
T  20967948 gaaagtttggtttcaacttgttgaaagtaagttctccttatgattta 20967994  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 20976152 - 20976225
Alignment:
Q  328 gttataatactcattttgttaaagaaatgtatggtcttcttgatgtgtttcttttagttttctttgaaaacattt 402  Q
    ||||| ||||||||||||| | ||| || || || | ||||||||||||||||||| ||||||| ||||||||||    
T  20976152 gttatgatactcattttgtaagagacatttacggccatcttgatgtgtttctttta-ttttcttcgaaaacattt 20976225  T

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Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 19645495 - 19645455
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagtt 63  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19645495 attatgttgaaagtttggtttcaacttgttgaaagtaagtt 19645455  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 20133138 - 20133097
Alignment:
Q  22 aattatgttgaaagtttggtttcaacttgttgaaagtaagtt 63  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  20133138 aattatgttgaaagtttggtttcatattgttgaaagtaagtt 20133097  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 22524980 - 22524939
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttc 64  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  22524980 attatgttgaaagcttggtttcaacttcttgaaagtaagttc 22524939  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 29872021 - 29872066
Alignment:
Q  22 aattatgttgaaagtttggtttcaacttgttgaaagtaagttcctc 67  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||    
T  29872021 aattatgttgaaagtttagtttcaattttttgaaagtaagttcctc 29872066  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 19325788 - 19325748
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagtt 63  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  19325788 attatgttgaaagtttggcttcaatttgttgaaagtaagtt 19325748  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 20456761 - 20456793
Alignment:
Q  24 ttatgttgaaagtttggtttcaacttgttgaaa 56  Q
    |||||||||||||||||||||||||||||||||    
T  20456761 ttatgttgaaagtttggtttcaacttgttgaaa 20456793  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 20057872 - 20057831
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttc 64  Q
    ||||||||||||| |||| ||||||||||||| |||||||||    
T  20057872 attatgttgaaagcttggcttcaacttgttgatagtaagttc 20057831  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 21218514 - 21218473
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttc 64  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  21218514 attatgtcgaaagcttggtttcaacttcttgaaagtaagttc 21218473  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 29881564 - 29881609
Alignment:
Q  22 aattatgttgaaagtttggtttcaacttgttgaaagtaagttcctc 67  Q
    |||||||||||||| || ||||||| || |||||||||||||||||    
T  29881564 aattatgttgaaagcttagtttcaattttttgaaagtaagttcctc 29881609  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 53775099 - 53775143
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttcctc 67  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||    
T  53775099 attatgttgaaagcttggtatcaacgtgttgaaagtaagttcctc 53775143  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 27618725 - 27618768
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttcct 66  Q
    ||||||||||||| |||||||||| || ||||||||||||||||    
T  27618725 attatgttgaaagcttggtttcaatttcttgaaagtaagttcct 27618768  T

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Target: scaffold0649 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 5693 - 5734
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttc 64  Q
    ||||| ||||||||||||||||  ||||||||||||||||||    
T  5693 attatattgaaagtttggtttctgcttgttgaaagtaagttc 5734  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 4401 - 4442
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttc 64  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  4401 attatgtcgaaagcttggtttcaacttcttgaaagtaagttc 4442  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 23087052 - 23087093
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttc 64  Q
    ||||||||||||| |||||||| |||||||| ||||||||||    
T  23087052 attatgttgaaagcttggtttcgacttgttggaagtaagttc 23087093  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 29597373 - 29597332
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttc 64  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  29597373 attatgttgaaagtttggcttcgatttgttgaaagtaagttc 29597332  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 42298375 - 42298416
Alignment:
Q  23 attatgttgaaagtttggtttcaacttgttgaaagtaagttc 64  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  42298375 attatgtcgaaagcttggtttcaacttcttgaaagtaagttc 42298416  T

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