View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594-Insertion-4 (Length: 987)
Name: NF5594-Insertion-4
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 608 - 951
Target Start/End: Complemental strand, 40079398 - 40079052
Alignment:
| Q |
608 |
atatgttgtgtgcatcaaacatttccttttgagatagacaagaggtacacataagagatggaaatggatacatgtaattaaggttagcagcaaacttcgt |
707 |
Q |
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| T |
40079398 |
atatgttgtgtacatcaaacatttccttttgagatagacaagaggtacacataagagatggaaatggatacatgtaattaaggttagcagcaaacttcgt |
40079299 |
T |
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| Q |
708 |
tcctgcaacgtcaacaacataacaaacacatgcatatttttataacgaaatgcgtgaaaaattggtaacggtatgcacataaagtgggagttatagcacc |
807 |
Q |
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| T |
40079298 |
tcctgcaacgtcaacaacataacaaacacatgcatatttttattacgaaatgcgtgaaaaattggtaacggtatgcacataaaatgggagttaaagcacc |
40079199 |
T |
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| Q |
808 |
tatatagaatagaacnnnnnnncttaaataactgataaataattgttatgttacaattagacatgtattttgtcaatcttttg-tatattcttgcccaac |
906 |
Q |
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| T |
40079198 |
tatatagaatagaacaaaaaaacttaaataactgataaataattgttatgttacaattagacatgtattttgtcaatcttttgttatattcttgcccaac |
40079099 |
T |
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| Q |
907 |
aatg-aaagttggttttttcttcttc-aaataacatgattaaacatg |
951 |
Q |
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| T |
40079098 |
aatgaaaagttggtttcttcttcttcaaaataacatgattaaacatg |
40079052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 247 - 566
Target Start/End: Complemental strand, 40079758 - 40079418
Alignment:
| Q |
247 |
atacatgtgtacatcatgttattgacgtgatataaatcatgttgagaacatttgttacatgtattcatttctcatctcttaccttttgctcattttagaa |
346 |
Q |
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| T |
40079758 |
atacatgtgtacatcatgttattgacgtgatataaatcatgttgagaacatttgttacatgtattcatttctcatctgttaccttttgctcattttagaa |
40079659 |
T |
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| Q |
347 |
ttgggttaatgattt-gaggcaactattgcgcgcgagaaaaggaattgggggaattttcctccatgatttttccgtccatttgacacaaatatatttgaa |
445 |
Q |
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| T |
40079658 |
ttgggttaatgattttgaggcaactattgcgcgagagaaaaggaattgggggaattttcctccatgattttcccgtccatttgacacaaatatatttgaa |
40079559 |
T |
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| Q |
446 |
gatcatgtgtccattcatattctctaccacgcaatattcgtatcaaatggtttaacataattttaaaatcaac--------------------taaatcc |
525 |
Q |
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| T |
40079558 |
ggtcatgtgcccattcatattctctaccacgcaatattcgtatcaaatggtttaacataattttaaaatcaacaatgatacatgtacatttcataaatcc |
40079459 |
T |
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| Q |
526 |
taacactcattcgacacttcatttatctctacaaatcttct |
566 |
Q |
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| T |
40079458 |
taacactcattcgacacttcatttatctctacaaatcttct |
40079418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 40080030 - 40079777
Alignment:
| Q |
6 |
cagaaggtcctagcaaaattcctccctgaatcacatgaatcataattatcaattatagatgttatgctaactctatgcagttgatcataattcttttgaa |
105 |
Q |
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| T |
40080030 |
cagaaggtcctagcaaaattcctccctgaatcacatgaatcataatcat----tatagatgttatgctaactctatgcagttgatcataattcttttgaa |
40079935 |
T |
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| Q |
106 |
acatttgtgttgtacagaattagatcaaatcttttagtcaaaactacatcccgcagctgtttaattttaccacattagttaattaagtttcnnnnnnngt |
205 |
Q |
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| T |
40079934 |
acatatgtgctgtacataattagatcaaatcttttagccaaaactacatcccgcagctgtttaattttaccacattagttaattaagtttctttttttgt |
40079835 |
T |
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| Q |
206 |
ctcacataggttgctttttattcacacattatgttgcaaacatacatgtgtacatcat |
263 |
Q |
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| T |
40079834 |
ctcacataggttactttttattcacacattctgttgcaaacatacatgtgtacatcat |
40079777 |
T |
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