View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594-Insertion-5 (Length: 786)
Name: NF5594-Insertion-5
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594-Insertion-5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 8 - 786
Target Start/End: Complemental strand, 1332409 - 1331628
Alignment:
| Q |
8 |
accttttccaatagaactgattatgatggcatataggaatcggcatatgagaaacacgaagccgtcagatcctgtaagcagagacataatcgtttccgta |
107 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1332409 |
accttttccaatagaactgattacgatggcatataggaatcggcatatgagaaacacgaagccgtcagatcctgtaagcagagacataatcgtttccgta |
1332310 |
T |
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| Q |
108 |
aatctgtacatctttgaagggattgagagcaattaaaattggcccaactttaatctgcatacagaaaacgcacaagcagcatatgagaatacatagataa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1332309 |
aatctgtacatctttgaagggattgagagcaattaaaattggcccaactttactctgcatacagaaaacgcacaagcagcatatgagaatacatagataa |
1332210 |
T |
|
| Q |
208 |
tcatctgtgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaacccgaagattgtgaagaactgagggctcgttcaaa |
307 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1332209 |
tcatctgcgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaaaccgaagattgtgaagaactgagggctcgttcaaa |
1332110 |
T |
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| Q |
308 |
tagctgagctgtctgtataagatcatccacacactctaaaatatcaggattagctggcaagagatctgttcgtgccactctcataacctgcagcaacaac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1332109 |
tagctgagctgtctgtataagatcatccacacactctaaaatatcaggattagctggcaagagatctgtttgtgccactctcataacctgcagcaacaac |
1332010 |
T |
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| Q |
408 |
ttatcaacataaatagcatgttatcttgcatactcaacaatgaa---tactatcttataaagacacaaaatttaaaagtttacatttccatttgagagtg |
504 |
Q |
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| T |
1332009 |
ttatcaacataaatagcatgttatcttgcatactcaacaatgaatagtactatcttataaagacacaaaatttaaaagtttacatttccatttgagagtg |
1331910 |
T |
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| Q |
505 |
aaactgatgcttgtactcctgaagttgactgtattcttcccagtccccacttccctcttggttgcttacaccaaacatgaaggaagtttctgtggnnnnn |
604 |
Q |
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| T |
1331909 |
aaactgatgcttgtactcctgaagttgactgtattcttcccagtccccacttccctcttggttgcttacaccaaacatgaaggaagtttctgtggaaaaa |
1331810 |
T |
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| Q |
605 |
nnnnnnnnnnnnnggaaatttaacagataacttcaaataaatatattcaaaagagttttaaactttagagtttgatagatatacaatgatatagcataaa |
704 |
Q |
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| T |
1331809 |
ccaaaaacaaaaaggaaatttaacagataacttcaaataaatatattcaaaagagttttaaactttagagtttgatagatatacaatgatatagcataaa |
1331710 |
T |
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| Q |
705 |
taatttttacaatgagaaaaacatgagaaaacatgacttgatcctagaggattcggcctttaggaaacaagatttgaccctc |
786 |
Q |
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| T |
1331709 |
taatttttacaatgagaaaaacatgagaaaacatgacttgatcctagaggattccgcctttaggaaacaagatttgaccctc |
1331628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 77 - 586
Target Start/End: Complemental strand, 33970837 - 33970334
Alignment:
| Q |
77 |
tcctgtaagcagagacataatcgtttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccaactttaatctgcatacagaaaac |
176 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
33970837 |
tcctgtaagcagagacataatcatttccgtaaatctgtacatctttgaagggattgagagcaattaaaattggcccagctttactctgcatacagaaaac |
33970738 |
T |
|
| Q |
177 |
gcacaagcagcatatgagaatacatagataatcatctgtgtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctaacccg |
276 |
Q |
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| T |
33970737 |
gcacaagcagcatatgagaatacatagataatcatctgagtaaaacaacaaaccatagcagcggacatacataaatcatatcttgagaatatctacaccg |
33970638 |
T |
|
| Q |
277 |
aagattgtgaagaactgagggctcgttcaaatagctgagctgtctgtataagatcatccacacactctaaaatatcaggattagctggcaagagatctgt |
376 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
33970637 |
aagattgtgaagaaccgagggctcgttcaaatagctgag----ctgtataagatcatccacgccctctaaaatatcaggattagctggcaagagatctgt |
33970542 |
T |
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| Q |
377 |
tcgtgccactctcataacctgcagcaacaacttatcaacataaatagcatgttatcttgcatactcaacaatgaatactatcttataaagacacaaaatt |
476 |
Q |
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| T |
33970541 |
tcgtgccactttcataacctgcagcaacaactcatcaacacaaatagcatgttatcttgcatactcaacaatgaagactatcttataaag--acaaaatt |
33970444 |
T |
|
| Q |
477 |
taaaagtttacatttccatttgagagtgaaactgatgcttgtactcctgaagttgactgtattcttcccagtccccacttccctcttggttgcttacacc |
576 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33970443 |
tagaagtttacatttccatttgagagtgaaactgatgcttgttctccagaagttgattgtattcttcccagtccccacttccctcttggttgcctacacc |
33970344 |
T |
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| Q |
577 |
aaacatgaag |
586 |
Q |
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|||||||||| |
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| T |
33970343 |
aaacatgaag |
33970334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 33972080 - 33972010
Alignment:
| Q |
8 |
accttttccaatagaactgattatgatggcatataggaatcggcatatgagaaacacgaagccgtcagatc |
78 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33972080 |
accttttccaatagaactgtttatgatggcatatgggaatcggcatatgagaaacacgaagccgtcagatc |
33972010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 22791074 - 22791006
Alignment:
| Q |
241 |
acatacataaatcatatcttgagaatatctaacccgaagattgtgaagaactgagggctcgttcaaata |
309 |
Q |
| |
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||||||||||||||| || |||||||||||| || ||||||||||||||| || ||||| |||||||| |
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| T |
22791074 |
acatacataaatcatctcccgagaatatctaaacctaagattgtgaagaaccgatggctcattcaaata |
22791006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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