View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594-Insertion-9 (Length: 156)
Name: NF5594-Insertion-9
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594-Insertion-9 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 4e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 25887937 - 25887789
Alignment:
| Q |
8 |
aagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaa |
107 |
Q |
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| T |
25887937 |
aagaggacaagaaacagctggtgaagatcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtgggaaa |
25887838 |
T |
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| Q |
108 |
ctgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactg |
156 |
Q |
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| T |
25887837 |
ctgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactg |
25887789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 25910544 - 25910396
Alignment:
| Q |
8 |
aagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaa |
107 |
Q |
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| T |
25910544 |
aagaggacaagaaacagctggtgaagatcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtgggaaa |
25910445 |
T |
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| Q |
108 |
ctgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactg |
156 |
Q |
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| T |
25910444 |
ctgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactg |
25910396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 25928383 - 25928235
Alignment:
| Q |
8 |
aagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaa |
107 |
Q |
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| T |
25928383 |
aagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatggtgtttcctatgtaagaggacttcaaggagattcctttgaaggtggaaaa |
25928284 |
T |
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| Q |
108 |
ctgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactg |
156 |
Q |
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| T |
25928283 |
ctgattggagatcgtcttaaagcttctgcttgttgcaaacattttactg |
25928235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 25957238 - 25957386
Alignment:
| Q |
8 |
aagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaa |
107 |
Q |
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|||||| ||||| ||||||||||||||||||||||| | | |||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
25957238 |
aagagggcaagagacagctggtgaagatcctttggtaagtgcaaagtatgctgtttcctttgtgagaggtcttcaaggtgattcctttgaaggtgggaaa |
25957337 |
T |
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| Q |
108 |
ctgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactg |
156 |
Q |
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| T |
25957338 |
cttaatgaagatcgtcttaaagcttctgcttgttgtaaacactttactg |
25957386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 33423677 - 33423541
Alignment:
| Q |
9 |
agaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaac |
108 |
Q |
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|||||||||||||||||||||||||||||| || ||| ||| || ||||||||||| ||||| |||||||||||||| ||||| ||| |||| || ||| |
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| T |
33423677 |
agaggacaagaaacagctggtgaagatcctatgatgacttctaactatgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaat |
33423578 |
T |
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| Q |
109 |
tgattggaggtcgtcttaaagcttctgcttgttgcaaaca |
148 |
Q |
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| T |
33423577 |
tga---ggggacaccttcaagcttctgcttgttgcaaaca |
33423541 |
T |
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