View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594_high_13 (Length: 236)
Name: NF5594_high_13
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2946535 - 2946304
Alignment:
| Q |
1 |
cctatcttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaagctc--------nnnnnnnncctgcc |
92 |
Q |
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| T |
2946535 |
cctatcttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaagctctttttttttttcttcttctgcc |
2946436 |
T |
|
| Q |
93 |
gtaacaccttctcatcaacaccttcaaattgagtttacactct-nnnnnnnntcttactaaccctgctataccaaaaatgacct---ttattattattat |
188 |
Q |
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| T |
2946435 |
gtaacaccttctcatcaacaccttcaaattg-ttttacactctaaaaaaaaatcttactaaccctgctataccaaaaatgacctttgttattattattat |
2946337 |
T |
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| Q |
189 |
tctaaattaaatttcatcttatcccacccattc |
221 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2946336 |
tctaaattaaatttcatcttatcccacccattc |
2946304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 2941321 - 2941249
Alignment:
| Q |
5 |
tcttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaagctc |
78 |
Q |
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| T |
2941321 |
tcttgattctagggtttggttcgcctcaagcttataaataggttc-aactccatctcataacatcaccaagctc |
2941249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 2946102 - 2946031
Alignment:
| Q |
5 |
tcttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaagctc |
78 |
Q |
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| T |
2946102 |
tcttgattctagggtttggtttgcctcaagcgtat-aataggttc-aaccccatctcataacatcatcaagctc |
2946031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 2945685 - 2945617
Alignment:
| Q |
5 |
tcttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaa |
74 |
Q |
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| T |
2945685 |
tcttgattttagggtttgatttgcctcaagcttataaataggttc-aaccccatctcataatatcatcaa |
2945617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 2946775 - 2946716
Alignment:
| Q |
159 |
tataccaaaaatgacctttattattattattctaaattaaatttcatcttatcccaccca |
218 |
Q |
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| T |
2946775 |
tataccaaaagtgacctttactattaatcttctaaattaaatttcatccaatcccaccca |
2946716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 2940748 - 2940702
Alignment:
| Q |
5 |
tcttgattctagggcttggtttgcctcaagcttataaataggttcaa |
51 |
Q |
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| T |
2940748 |
tcttgattataaggtttgatttgcctcaagcttataaataggttcaa |
2940702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 2945962 - 2945890
Alignment:
| Q |
146 |
ttactaaccctgctataccaaaaatgacctttattattattattctaaattaaatttcatcttatcccaccca |
218 |
Q |
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| T |
2945962 |
ttactaacccagctatacaaaaaattacctttactcttaatcttataaattaaatttcatgcaatcccaccca |
2945890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 21192357 - 21192429
Alignment:
| Q |
5 |
tcttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaagctc |
78 |
Q |
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| T |
21192357 |
tcttgattctagggtttggttttcctcaagcttataaataggttc-aaccccatctcataacatcaccaagctc |
21192429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 21192497 - 21192557
Alignment:
| Q |
146 |
ttactaaccctgctataccaaaaatgacctttattattattattctaaattaaatttcatc |
206 |
Q |
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|||||||||||| |||||||||||| ||||||| | ||| | ||||||||||||||||||| |
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| T |
21192497 |
ttactaaccctgttataccaaaaattacctttactcttagtcttctaaattaaatttcatc |
21192557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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