View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594_high_14 (Length: 231)
Name: NF5594_high_14
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 4556985 - 4557197
Alignment:
| Q |
2 |
ccaaaattgtttactagttcatcactcacaacttcagttatcaaatctttaaagatcagccgctcgatatccaacaccatatttggtatctcgctgaaac |
101 |
Q |
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| T |
4556985 |
ccaaaattgtttactagttcatcactcacaacttcagttatcaaatctttaaagatcaaccgctcaatatccaacaccatattcggtatctcgctgcaac |
4557084 |
T |
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| Q |
102 |
aattagtccacatggtgttgtgatcgttcaaatctctccacaaaagacttgtcaatttctcatcctcatgatgaacaaagcttacattcctattttgagg |
201 |
Q |
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| T |
4557085 |
agttagtccaaattgtgttgtgatccttcaaatctctccacaaaagacttaacaaattgtcatcctc---atgaacaaagtttagattcctattttgagg |
4557181 |
T |
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| Q |
202 |
ttgtaaatcatctatc |
217 |
Q |
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| T |
4557182 |
ttgtaaatcatctatc |
4557197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 5023215 - 5023282
Alignment:
| Q |
26 |
ctcacaacttcagttatcaaatctttaaagatcagccgctcgatatccaacaccatatttggtatctc |
93 |
Q |
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|||||||||||||||||||||||||| ||||||| | || ||||||||||| | |||||||||||| |
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| T |
5023215 |
ctcacaacttcagttatcaaatctttgaagatcaatctttcaatatccaacacaacatttggtatctc |
5023282 |
T |
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