View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5594_high_4 (Length: 500)
Name: NF5594_high_4
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 13161556 - 13161067
Alignment:
| Q |
1 |
gaacacaaattttgtttatattattggttccatatatacctatatcctccttaatttttgaacaaagtcaacaccactctaaaattatcagcaatgctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161556 |
gaacacaaattttgtttatattattggttccatatatacctatatcctccttaatttttgaacaaagtcaacaccactctaaaattatcagcaatgctat |
13161457 |
T |
|
| Q |
101 |
ataaggaaaacagaaaaaatgcatcacgaaatcgaaattaatcagtaaaaaataagagccagtggaattcaagagaatcgtagcaactcatataatatag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13161456 |
ataaggaaaacagaaaaaatgcatcacgaaatcgaaattaatcagtaaaaaataagagccagtggaactcaagagaatcgtagcaactcatataatatag |
13161357 |
T |
|
| Q |
201 |
atagagtagtatataatatgaacctcaacattccaacattttctacaaccaaaaaagaaagataaataaaatacagacaggagaaattctcttattttat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161356 |
atagagtagtatataatatgaacctcaaccttccaacattttctacaaccaaaaaagaaagataaataaaatacagacaggagaaattctcttattttat |
13161257 |
T |
|
| Q |
301 |
acatatataaaatcactcaaatcttgaaaaccttgattttttcttacatgtcactcttaagagaaatagttgcattgaagtcaccatttacaatttcccc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13161256 |
acatatataaaatcactcaaatcttgaaaaccttgattttttcttacatgtcactcttaagagaaatagttgcattgaagtcaccattgacaatttcccc |
13161157 |
T |
|
| Q |
401 |
atttctttctccaccaaatccaaatggttatttcttttgtttattagggtaaaacactccaaaatgtttctccaattctggactcctttg |
490 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13161156 |
atttctttctccaccaaatccaaatgggtatttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttg |
13161067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 13152097 - 13152153
Alignment:
| Q |
416 |
aaatccaaatggttatttcttttgtttattagggtaaaacactccaaaatgtttctc |
472 |
Q |
| |
|
|||||||||||| || || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13152097 |
aaatccaaatggatactttttctgtttattaggataaaacactccaaaatgtttctc |
13152153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University