View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594_high_5 (Length: 448)
Name: NF5594_high_5
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 430
Target Start/End: Complemental strand, 1332801 - 1332404
Alignment:
| Q |
12 |
agagacacggctgtaaaagcaaaactgtcatagaagctcaaagccgagaggaaatcaatcacacaacttggtagttttctgttaacaattgtgttctctg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1332801 |
agagacacggctgtaaaagcaaaactgtcatagaagctcaaagccgaggggaaatcaatcacacaacttggtagttttctgtcaacaattgtgttctctg |
1332702 |
T |
|
| Q |
112 |
agcatatttaggaggattaccaccctcaactggtatgatatttaaaaagattatctcaaagatggtcattgagatatcaaagatgatacagaagtataca |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1332701 |
agcatatttaggaggattaccaccctcaactggtatgatatttaaaaagattatctca---------------------aagatgatacagaagtataca |
1332623 |
T |
|
| Q |
212 |
t--gtatcccaactaattgataggttgtatagaaaatacacctttaagagatgaggtgaagatccagcacaaagttgataaagtatgtgataagacctct |
309 |
Q |
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| T |
1332622 |
tatgtatcccaactaattgataggttgtatagaaaatacacctttaaga--tgaggtgaagatccagcacaaagttgataaagtatgtgataagacctct |
1332525 |
T |
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| Q |
310 |
cgccattagccagttgaacaactcttgacttccgacagaagacacgatgaaataagaaatcgagaaagttaaatatttcagttccacattaaagttcaaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1332524 |
cgccattagccagttgaacaactcttgacttccgacagaagacacgatgatataagaaatccagaaagttaaatatttcagttccacattaaagttcaaa |
1332425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 149 - 430
Target Start/End: Complemental strand, 33972353 - 33972075
Alignment:
| Q |
149 |
atatttaaaaagattatctcaaagatggtcattgagatatcaaagatgatacagaagtatacatgtatcccaactaattgataggttgtatagaaaatac |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||||||||||||| |
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| T |
33972353 |
atatttaaaaagattatctcaaagatggtcattgagatatcaaagatggtacagaagtatacaagtatccaaactaattgataagttgtatagaaaatac |
33972254 |
T |
|
| Q |
249 |
acctttaagagatgaggtgaagatccagcacaaagttgataaagtatgtgataagacctctcgccattagccagttgaacaactcttgacttccgacaga |
348 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33972253 |
acctttaaga--tgaggtgaagatccagcacaaagttgataaaatatgtgataagacctctcgccattagccagttgaacaactcttgactgccgacaga |
33972156 |
T |
|
| Q |
349 |
agacacgatgaaataagaaatcgagaaagttaaatatttcagttccacattaaagttcaaataagaaacacaagttaccttt |
430 |
Q |
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| T |
33972155 |
agacacgatgatataagaaatcgagaaagttaaatatttcagttccacacttaagttcaaataag-aacacaagttaccttt |
33972075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 43497377 - 43497518
Alignment:
| Q |
12 |
agagacacggctgtaaaagcaaaactgtcatagaagctcaaagccgagaggaaatcaatcacacaacttggtagttttctgttaacaattgtgttctctg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43497377 |
agagacacggctgtaaaagcaaaactgtcatagaagctcaaagccgagaggaaatcaatcacacaacttggtagttttctgttaacaactgtgttctctg |
43497476 |
T |
|
| Q |
112 |
agcatatttaggaggattaccaccctcaactggtatgatatt |
153 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43497477 |
agcatatttaggaggattaccacccttaactggtatgatatt |
43497518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 28839383 - 28839274
Alignment:
| Q |
28 |
aagcaaaactgtcatagaagctcaaagccgagaggaaatcaatcacacaacttggtagttttctgttaacaattgtgttctctgagcatatttaggagga |
127 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |
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| T |
28839383 |
aagcaaaactgtcttagaaactcaaagccgagatgaaaccaatcacacaacttggtagttttctattaacaattgtgttctctgaacatatttgggagga |
28839284 |
T |
|
| Q |
128 |
ttaccaccct |
137 |
Q |
| |
|
||||||||| |
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|
| T |
28839283 |
ctaccaccct |
28839274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 36084091 - 36084232
Alignment:
| Q |
12 |
agagacacggctgtaaaagcaaaactgtcatagaagctcaaagccgagaggaaatcaatcacacaacttggtagttttctgttaacaattgtgttctctg |
111 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36084091 |
agagacacggctataagaggaaaactgtcatagaagctcaaagccgagaggaaatcaatcacacaacttggtagttttctgttaccaattgtgttctctt |
36084190 |
T |
|
| Q |
112 |
agcatatttaggaggattaccaccctcaactggtatgatatt |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36084191 |
agcatatttaggaggattaccaccctcaactggtatgatatt |
36084232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 50603036 - 50603177
Alignment:
| Q |
12 |
agagacacggctgtaaaagcaaaactgtcatagaagctcaaagccgag---aggaaatcaatcacacaacttggtagttttctgttaacaattgtgttct |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
50603036 |
agagacacggctgtaaaagcaaaactttcatagaagctcaaagccaagattaaaaaatcaatcacacaacttggtagttttctgttatcaactgtgttct |
50603135 |
T |
|
| Q |
109 |
ctgagcatatttaggaggattaccaccctcaactggtatgat |
150 |
Q |
| |
|
|||||||| ||| |||||||||||||||| || ||||||||| |
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| T |
50603136 |
ctgagcatgtttgggaggattaccacccttaagtggtatgat |
50603177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 50609584 - 50609700
Alignment:
| Q |
22 |
ctgtaaaagcaaaactgtcatagaagctcaaagccgagagga-aatcaatcacacaacttggtagttttctgttaacaattgtgttctctgagcatattt |
120 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||| || |||| ||||||||| |||||||| |||||||| |||| || ||||||||||||||| |||| |
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|
| T |
50609584 |
ctgtgaaagcaaaactgtcatagaatcacaaagtcggaaggataatcaatcagacaacttgatagttttccgttatcagctgtgttctctgagcaaattt |
50609683 |
T |
|
| Q |
121 |
aggaggattaccaccct |
137 |
Q |
| |
|
|| ||||||||||||| |
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| T |
50609684 |
gggcggattaccaccct |
50609700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 11910655 - 11910694
Alignment:
| Q |
12 |
agagacacggctgtaaaagcaaaactgtcatagaagctca |
51 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||| |
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| T |
11910655 |
agagacacggctgtaagagcaaaactgttatagaagctca |
11910694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 15436246 - 15436348
Alignment:
| Q |
23 |
tgtaaaagcaaaactgtcatagaagctcaaagccgagaggaaatcaatcacacaacttggtagttttctgttaacaattgtgttctctgagcatatttag |
122 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||| ||| |||| ||| |||||||||| |||||||||| |||||||| ||| ||||||| ||||||| | |
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|
| T |
15436246 |
tgtataagcaaaactgtcatggaatttcaaagccaagacgaaaccaaccacacaacttagtagttttctattaacaatcgtggtctctgaacatatttgg |
15436345 |
T |
|
| Q |
123 |
gag |
125 |
Q |
| |
|
||| |
|
|
| T |
15436346 |
gag |
15436348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 22792336 - 22792266
Alignment:
| Q |
269 |
agatccagcacaaagttgataaagtatgtgataagacctctcgccattagccagttgaacaactcttgact |
339 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||||||| ||| | |||| ||||||||||||||||| |
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| T |
22792336 |
agatccagcacaaagttgataaaatacgtgatacgacctctcaccactggccaattgaacaactcttgact |
22792266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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