View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594_high_7 (Length: 338)
Name: NF5594_high_7
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 29190005 - 29189690
Alignment:
| Q |
1 |
aatagaggttcctgatcaaccaaacattggctttttgttaataattaatatatcttataaagtttcaacataattgacaaataaaactatgaaataacaa |
100 |
Q |
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| T |
29190005 |
aatagaggttcctgatcaaccaaacattggctttttgttaataattaatatatcttataaagtttcaacataattgacaaataaaactatgaaataacaa |
29189906 |
T |
|
| Q |
101 |
ttaagcaaatgtatagaacatgaaaccatgcatagttgttagtttaacctttgaatcttgagagtaggttggtaagttatgttgcttgcaccaaatatcc |
200 |
Q |
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| T |
29189905 |
ttaagcaaatgtatagaacatgaaaccaagcatagttgttagtttaaccttttgatcttgagagtaggttggtaagttatgttgcttgcaccaaatatcc |
29189806 |
T |
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| Q |
201 |
cagccattgattgcatcttcaagatatccacttgatgtatcagctgcaaaccaagactcagctgtagaaacaccatagagacaaaataagcaaacatata |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29189805 |
cagccattgattgcatcttcaagatatccactagatgtatcagctgcaaaccaagactcagctgtagaaacaccatagagacaaaataagcaaacatata |
29189706 |
T |
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| Q |
301 |
ctgagtttctatgaag |
316 |
Q |
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|||||||||||||||| |
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| T |
29189705 |
ctgagtttctatgaag |
29189690 |
T |
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