View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594_low_1 (Length: 552)
Name: NF5594_low_1
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Original strand, 56469766 - 56470288
Alignment:
| Q |
13 |
aatatcaggagactggagagctggaatcttttgttagagccagcaataaagaggttgcggatagcatcatcgttggtagtaaaaaagagagaagcgaggt |
112 |
Q |
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| T |
56469766 |
aatatcaggagactggagagctggaatcttttgtgagagccagcaataaagaggttgcggatagcatcatcgttggtagtaaaaaagagagaagcgaggt |
56469865 |
T |
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| Q |
113 |
cattgtagtgattaggaggacattggaaattcttgtagtgtccagaatgccctacggttgggcactgatcccccacatgagaagtccaagggatgcactg |
212 |
Q |
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| T |
56469866 |
cattgtagtgattaggaggacattggaaattcttgtagtgtccagaatgccctacggttgggcactgatcccccacatgaggaggacaagggatgcactt |
56469965 |
T |
|
| Q |
213 |
tgatagccatggaacccaaaatgaacagcaagaggtcaaaaatgatataatcatcacaagtattattttaaatatagggcctttcctgcaataaatatat |
312 |
Q |
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| T |
56469966 |
tgatagccatggaaccccaaatgaacagcaagaggtcaaaaatgatataatcatcacaagtattattttaaatatagggcctttcctgcaataaatatat |
56470065 |
T |
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| Q |
313 |
ataatcattcacacccgggaatactacaatnnnnnnngaaaattcgaaatggggcggagggggaatgacatactcattaatgatgttgtaagtgcgaagg |
412 |
Q |
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| T |
56470066 |
aaaatcattc-cacccgggaatactacaataaaaaaagaaaattcgaaatggggcggagggggaatgacatactcattaatgatgttgtaagtgcgaagg |
56470164 |
T |
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| Q |
413 |
accttatccacaagataattataaaggcttcccaagagacctccaataactccaagaaatataactactagtagatcaggtatgctgtatgcaggcttta |
512 |
Q |
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| T |
56470165 |
accttatccacaagataattataaaggcttcccaagagacctccaataactccaagaaatataactactagtagatcaggtatgctgtatgcaggcttta |
56470264 |
T |
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| Q |
513 |
ctgaattaacatcaaacattatca |
536 |
Q |
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| T |
56470265 |
ctgaattaacatcaaacattatca |
56470288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 47779629 - 47779666
Alignment:
| Q |
113 |
cattgtagtgattaggaggacattggaaattcttgtag |
150 |
Q |
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| T |
47779629 |
cattgtagtgattaggagggcattggaatttcttgtag |
47779666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 400 - 531
Target Start/End: Complemental strand, 154224 - 154093
Alignment:
| Q |
400 |
gtaagtgcgaaggaccttatccacaagataattataaaggcttcccaagagacctccaataactccaagaaatataactactagtagatcaggtatgctg |
499 |
Q |
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||||||||||||||| ||||| ||||||||||| |||| |||||||| |||||||||||| |||||||||||||||||| | || || |||||| || || |
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| T |
154224 |
gtaagtgcgaaggactttatcgacaagataattgtaaaagcttcccatgagacctccaatgactccaagaaatataactgcgaggaggtcaggtgtggtg |
154125 |
T |
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| Q |
500 |
tatgcaggctttactgaattaacatcaaacat |
531 |
Q |
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|| ||||||||| | ||||||||||||||||| |
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| T |
154124 |
taggcaggctttgcagaattaacatcaaacat |
154093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 2334124 - 2334161
Alignment:
| Q |
113 |
cattgtagtgattaggaggacattggaaattcttgtag |
150 |
Q |
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||||||||||||||||||| |||||||| ||||||||| |
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| T |
2334124 |
cattgtagtgattaggagggcattggaatttcttgtag |
2334161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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