View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5594_low_10 (Length: 270)
Name: NF5594_low_10
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5594_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 30524310 - 30524103
Alignment:
| Q |
36 |
cttcaaagagcctagcagcgaaactcgcgcatacttagtttgatgagaaatagggaattgcgggttcaaccctgcaccccatgatatcaaatgtccctgc |
135 |
Q |
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| T |
30524310 |
cttcaaagagcctagcagcgaaactcgcgcataattagtatgatgagaaatagggaattacgggttcaaccctgca--------tatcaaatgtccctgc |
30524219 |
T |
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| Q |
136 |
aactatttatcatctgagttgtacttacatactagattagctcattaagtgatatttatactaattattattgttgattttgtttttgaattataggtat |
235 |
Q |
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| T |
30524218 |
aactatttatcatctgagttgtacttacagactagattagctcattaagtgatatatatactaattattattgttgattttgtttttgaattataggtat |
30524119 |
T |
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| Q |
236 |
ggtgctatgttcaagt |
251 |
Q |
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|||||||||||||||| |
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| T |
30524118 |
ggtgctatgttcaagt |
30524103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 40094662 - 40094735
Alignment:
| Q |
90 |
gaattgcgggttcaaccctgcaccccatgatatcaaatgtccctgcaactatttatcatctgagttgtacttac |
163 |
Q |
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|||||| |||||||| ||||| ||| ||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
40094662 |
gaattgtgggttcaaacctgcgttccaacatatcaaatgtccctgcaaaattttaccatctgagttgtacttac |
40094735 |
T |
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