View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5594_low_15 (Length: 229)

Name: NF5594_low_15
Description: NF5594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5594_low_15
NF5594_low_15
[»] chr4 (6 HSPs)
chr4 (18-86)||(20376999-20377067)
chr4 (20-86)||(20369070-20369136)
chr4 (20-86)||(20389371-20389437)
chr4 (162-216)||(20376869-20376923)
chr4 (20-86)||(20347674-20347740)
chr4 (162-216)||(20368923-20368975)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 20377067 - 20376999
Alignment:
Q  18 atgagaagcgtggaaggggacgtcctcgtggttctggaaaattgcaaattttggcttccattggtatga 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20377067 atgagaagcgtggaaggggacgtcctcgtggttctggaaaattgcaaattttggcttccattggtatga 20376999  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 20369136 - 20369070
Alignment:
Q  20 gagaagcgtggaaggggacgtcctcgtggttctggaaaattgcaaattttggcttccattggtatga 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20369136 gagaagcgtggaaggggacgtcctcgtggttctggaaaattgcaaattttggcttccattggtatga 20369070  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 20389437 - 20389371
Alignment:
Q  20 gagaagcgtggaaggggacgtcctcgtggttctggaaaattgcaaattttggcttccattggtatga 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20389437 gagaagcgtggaaggggacgtcctcgtggttctggaaaattgcaaattttggcttccattggtatga 20389371  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 20376923 - 20376869
Alignment:
Q  162 atattgcttggttgagaagggtttgttttttacacttgaaacttgttgaaatgat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20376923 atattgcttggttgagaagggtttgttttttacacttgaaacttgttgaaatgat 20376869  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 20347740 - 20347674
Alignment:
Q  20 gagaagcgtggaaggggacgtcctcgtggttctggaaaattgcaaattttggcttccattggtatga 86  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||||    
T  20347740 gagaagcgtggaaggggacgtcctcgtggttctggaaaactgcagagtttggctcccattggtatga 20347674  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 20368975 - 20368923
Alignment:
Q  162 atattgcttggttgagaagggtttgttttttacacttgaaacttgttgaaatgat 216  Q
    |||||| |||||||| ||||  || ||||||||||||||||||||||||||||||    
T  20368975 atattgtttggttgaaaagg--ttcttttttacacttgaaacttgttgaaatgat 20368923  T

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