View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5595-Insertion-11 (Length: 267)

Name: NF5595-Insertion-11
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5595-Insertion-11
NF5595-Insertion-11
[»] chr4 (18 HSPs)
chr4 (8-266)||(11131147-11131405)
chr4 (10-241)||(54870803-54871034)
chr4 (47-230)||(10552558-10552741)
chr4 (42-245)||(18921827-18922030)
chr4 (42-245)||(30739500-30739703)
chr4 (66-220)||(37207401-37207555)
chr4 (42-217)||(45637345-45637520)
chr4 (42-218)||(52577899-52578075)
chr4 (57-219)||(30972395-30972557)
chr4 (161-241)||(13137114-13137194)
chr4 (42-220)||(8813915-8814093)
chr4 (42-136)||(13157346-13157440)
chr4 (161-245)||(20510427-20510511)
chr4 (64-103)||(2610781-2610820)
chr4 (184-223)||(37772969-37773008)
chr4 (180-226)||(13608948-13608994)
chr4 (186-220)||(27270012-27270046)
chr4 (186-218)||(21204906-21204938)
[»] chr3 (12 HSPs)
chr3 (8-266)||(29542347-29542605)
chr3 (12-245)||(22533887-22534121)
chr3 (12-251)||(41878577-41878816)
chr3 (12-241)||(42806274-42806503)
chr3 (10-241)||(53876866-53877097)
chr3 (10-232)||(6925834-6926056)
chr3 (90-241)||(19979263-19979414)
chr3 (42-217)||(47160903-47161078)
chr3 (48-227)||(6894114-6894293)
chr3 (40-91)||(3459258-3459309)
chr3 (161-216)||(37537238-37537293)
chr3 (190-226)||(25408827-25408863)
[»] chr1 (17 HSPs)
chr1 (12-241)||(28400380-28400609)
chr1 (12-251)||(28442120-28442359)
chr1 (12-241)||(5411624-5411853)
chr1 (10-232)||(48973534-48973756)
chr1 (42-232)||(45718248-45718437)
chr1 (70-232)||(12688121-12688283)
chr1 (42-226)||(16909036-16909220)
chr1 (42-217)||(2653732-2653907)
chr1 (33-220)||(42476221-42476408)
chr1 (42-220)||(52251256-52251434)
chr1 (184-226)||(52626563-52626605)
chr1 (161-226)||(8527053-8527118)
chr1 (161-226)||(17128519-17128584)
chr1 (117-226)||(23997102-23997211)
chr1 (161-226)||(26260785-26260850)
chr1 (186-225)||(44675154-44675193)
chr1 (161-219)||(9484879-9484937)
[»] chr6 (14 HSPs)
chr6 (12-246)||(29321304-29321538)
chr6 (12-246)||(11298572-11298806)
chr6 (12-230)||(32533060-32533278)
chr6 (43-232)||(18015739-18015928)
chr6 (42-227)||(5667364-5667549)
chr6 (64-241)||(18671972-18672148)
chr6 (70-227)||(18673307-18673464)
chr6 (126-230)||(15117247-15117351)
chr6 (40-220)||(11324380-11324560)
chr6 (48-153)||(34018081-34018186)
chr6 (184-222)||(10944170-10944208)
chr6 (184-225)||(17292767-17292808)
chr6 (184-220)||(22469479-22469515)
chr6 (192-220)||(31454046-31454074)
[»] chr8 (10 HSPs)
chr8 (12-241)||(7179015-7179244)
chr8 (12-246)||(16489440-16489674)
chr8 (29-220)||(41255043-41255234)
chr8 (43-230)||(38685676-38685863)
chr8 (43-220)||(43776134-43776311)
chr8 (127-245)||(38233202-38233320)
chr8 (41-220)||(33191209-33191387)
chr8 (70-227)||(38738367-38738525)
chr8 (161-220)||(37929141-37929200)
chr8 (184-219)||(8462520-8462555)
[»] chr7 (12 HSPs)
chr7 (12-239)||(38342849-38343076)
chr7 (12-241)||(40616719-40616948)
chr7 (14-217)||(27854769-27854972)
chr7 (126-246)||(34871565-34871685)
chr7 (29-179)||(11884268-11884418)
chr7 (210-266)||(3535817-3535873)
chr7 (126-220)||(8566778-8566872)
chr7 (43-136)||(37137251-37137344)
chr7 (36-100)||(9490968-9491032)
chr7 (36-100)||(24905193-24905257)
chr7 (187-223)||(34237214-34237250)
chr7 (180-226)||(9628252-9628298)
[»] chr5 (14 HSPs)
chr5 (10-232)||(21041832-21042054)
chr5 (12-241)||(7961129-7961358)
chr5 (16-218)||(32017992-32018194)
chr5 (42-245)||(7465138-7465341)
chr5 (42-241)||(8487965-8488164)
chr5 (151-227)||(29994642-29994718)
chr5 (173-226)||(16610614-16610667)
chr5 (161-245)||(12831494-12831578)
chr5 (161-245)||(12863469-12863553)
chr5 (184-220)||(39839961-39839997)
chr5 (180-227)||(8006827-8006874)
chr5 (183-226)||(32252175-32252218)
chr5 (161-226)||(26778719-26778784)
chr5 (72-100)||(11980002-11980030)
[»] chr2 (8 HSPs)
chr2 (12-220)||(24739702-24739910)
chr2 (12-241)||(841533-841762)
chr2 (64-232)||(40426920-40427088)
chr2 (66-245)||(1997678-1997857)
chr2 (184-226)||(8090525-8090567)
chr2 (184-226)||(27009255-27009297)
chr2 (49-111)||(38332161-38332223)
chr2 (184-226)||(45131126-45131168)
[»] scaffold0225 (1 HSPs)
scaffold0225 (70-220)||(6448-6598)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 11131405 - 11131147
Alignment:
Q  8 atgtggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgcc 107  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||| || ||||||||| | ||||||||||||||||| |||||||| |||||||||    
T  11131405 atgtggtgcctctaagacgaagcaatctattcttcaggtgatttggtttgcgactatgtgggagatttggaaggaaaggaataataggatctttaatgcc 11131306  T
Q  108 aaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggtt 207  Q
    || |||| ||||||| | |||||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11131305 aaggttacctctattctacaggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggtt 11131206  T
Q  208 ggtggcttagtccttttactttactgggaataggttaacaggtggatggtgttaagctg 266  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||| ||| |||||||||    
T  11131205 ggtggcttagtccttttactttattaggaataggttaaccggtggctggagttaagctg 11131147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 54871034 - 54870803
Alignment:
Q  10 gtggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaa 109  Q
    ||||||||||||||   ||||||||||| || |||||||||||||| ||||| |||||| | |||||||||||||| || ||||||||||||||||| ||    
T  54871034 gtggtgtctctaagtccaagcaatctattctacaggtgatttggtttgcaacaatgtgggagatttggaaggaaagaaataataggatttttaatgcaaa 54870935  T
Q  110 agttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttgg 209  Q
     ||||| ||| || | ||||||||||| |  ||||| ||  | |||||  ||||| | || ||||||||||| |||||||||||||||||||||||||||    
T  54870934 ggttagttctgttatacaggtggtggacaagattaaattgttgactttcaagtggttaaatgtgaagtttgtaactcttccctttaattatcatggttgg 54870835  T
Q  210 tggcttagtccttttactttactgggaatagg 241  Q
    ||||||||||| ||||||||||| || |||||    
T  54870834 tggcttagtccgtttactttactaggcatagg 54870803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 230
Target Start/End: Original strand, 10552558 - 10552741
Alignment:
Q  47 gatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaag 146  Q
    ||||||||| || | | ||||| |||||||||||||||||||||  |  ||||||||| | || | |||||||||| |||||||||||||||| ||||||    
T  10552558 gatttggtttgcgaatttgtgggaaatttggaaggaaaggaacaccataatttttaattctaaggatagctctattatgcaggtggtggataggattaag 10552657  T
Q  147 ttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttacttta 230  Q
    ||  |||| ||  ||||| |||||||||||| ||  |||||||||||||| ||||||||||||||||||||||| || ||||||    
T  10552658 ttgttaacattcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtccgttcacttta 10552741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 18921827 - 18922030
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||  |||||| | ||| |||||||||||||||||||||| | |||||||||||  |||  ||| || ||| | ||||||||||| || |    
T  18921827 caggttatttggtgtgcaactgtttgggaaatttggaaggaaaggaacaacatgatttttaatgataaacatagttcaattgttcaggtggtggacagga 18921926  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaatagg 241  Q
    ||||| | ||||||| | ||||| |||||||||||| ||   ||||||||||||||||||||||||||| |  ||||||||| |||||| | || |||||    
T  18921927 ttaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggttgactagtcctttcactttattaggcatagg 18922026  T
Q  242 ttaa 245  Q
    ||||    
T  18922027 ttaa 18922030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 30739703 - 30739500
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||  |||||| ||||| ||||||||||||||| ||| || | |||||||||||  |||  | | || ||  | ||||||||||| |  |    
T  30739703 caggttatttggtgtgcaactgtgtgggaaatttggaaggaaaagaataacaagatttttaatgataaacatggttcaatcgttcaggtggtggacatga 30739604  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaatagg 241  Q
    ||||| | ||||||| | ||||| |||||||||||| ||   |||||||||||||||||||||||||||||  ||||||||| |||||| | || |||||    
T  30739603 ttaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttcactttattaggcatagg 30739504  T
Q  242 ttaa 245  Q
    ||||    
T  30739503 ttaa 30739500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 37207555 - 37207401
Alignment:
Q  66 tggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggc 165  Q
    ||||||||||| ||| |||| || | |||||||||||| ||   || |||| ||||| | || ||||||||||| |||||||| ||||||||  | |||     
T  37207555 tggaaaatttgaaagaaaagaaatagtaggatttttaaggcattagatagcactattattcaagtggtggataggattaagttgctaactttcaattggt 37207456  T
Q  166 tgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    | |||||||||||| | |||||||||||||||||||||||||| ||||| |||||    
T  37207455 taaaggtgaagtttataactcttccctttaattatcatggttgatggctaagtcc 37207401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 45637345 - 45637520
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||| |||||  ||||| |||||||||| ||||| |||||||||||||| || | ||||  | | ||||||  |||||||||||||| ||    
T  45637345 caggtcatttggtttgcaacggtgtgggaaatttggaaagaaagaaacaataggattttcaacgacaaaaattgttctattccgcaggtggtggataaaa 45637444  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttag 217  Q
    |||||| ||| |||||   |||| |||||| |||   ||||| | ||||| | ||||| |||||||||||||||||    
T  45637445 ttaagtcacttactttcacgtggttgaaggggaaacatgtcagtattcccctcaattaacatggttggtggcttag 45637520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 52577899 - 52578075
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||| || ||  ||||| |||| ||||||||||| || || ||| |||| ||||  |||||| ||||  || | |||||| | ||||  |    
T  52577899 caggtcatttggtttgctacggtgtgggaaatctggaaggaaagaaataacaggcttttcaatgataaagtttgctcggttcttcaggtgatagataaga 52577998  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 218  Q
    ||||||  ||  |||||  |||| ||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  52577999 ttaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagt 52578075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 30972557 - 30972395
Alignment:
Q  57 gcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaactt 156  Q
    ||||||| ||||||||||||||| ||||| || || | | | ||||||| |||||   |||| ||| |||||||||| |||| ||||||||  || ||||    
T  30972557 gcaactacgtggaaaatttggaaagaaagaaataacatgctctttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactt 30972458  T
Q  157 ttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 219  Q
    |   ||||||||||| ||| |||    |||||||||| || |||||||| |||||||||||||    
T  30972457 tcatgtggctgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtc 30972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 13137114 - 13137194
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaatagg 241  Q
    |||| |||||||||| ||||  ||||||  ||| |||||||||||||||||||||||||| ||||| ||||| || |||||    
T  13137114 gtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgtttaccttactaggcatagg 13137194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 8813915 - 8814093
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||| |||||  | ||| |||||||||| ||||| ||||||||||| || || | ||||  | |||||||| ||||||||||||| | ||    
T  8813915 caggttatttggtttgcaacagtctgggaaatttggaaagaaagaaacaataggatcttcaacgacaaaaattgctctattgtgcaggtggtggacaaaa 8814014  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    | || | | | ||||||  |||| |||| | ||| | ||  | ||||||| | ||||| ||||||||||||||||||||    
T  8814015 tcaaatcattgacttttacgtggttgaaagggaaatatgctagtcttcccctcaattaccatggttggtggcttagtcc 8814093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 13157346 - 13157440
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtgga 136  Q
    ||||| |||||||| |||||  ||||| |||| ||||| ||||| ||||| | |||||||||||| ||||  ||||| ||| |||||||||||||    
T  13157346 caggtcatttggtttgcaacagtgtgggaaatatggaaagaaagaaacaacaagatttttaatgcaaaagaaagctcaattatgcaggtggtgga 13157440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 20510427 - 20510511
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaataggttaa 245  Q
    |||| |||||||||| |||  ||| |||||||| |||| ||||||||||||||||||||| || ||  | ||||| |||||||||    
T  20510427 gtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcaccatgctgggcataggttaa 20510511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 2610820 - 2610781
Alignment:
Q  64 tgtggaaaatttggaaggaaaggaacaataggatttttaa 103  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  2610820 tgtggaaaatttggaaggaaagaaacaacaggatttttaa 2610781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 37772969 - 37773008
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtccttt 223  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  37772969 ctcttcccttcaattaccatggttggtggcttagtccttt 37773008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 13608994 - 13608948
Alignment:
Q  180 gtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  13608994 gtcaatcttcccttcaattaccatggttggtggcttagtccgtttac 13608948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 27270046 - 27270012
Alignment:
Q  186 cttccctttaattatcatggttggtggcttagtcc 220  Q
    |||||||| ||||||||||||||||||||||||||    
T  27270046 cttcccttcaattatcatggttggtggcttagtcc 27270012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 21204938 - 21204906
Alignment:
Q  186 cttccctttaattatcatggttggtggcttagt 218  Q
    |||||||| ||||||||||||||||||||||||    
T  21204938 cttcccttcaattatcatggttggtggcttagt 21204906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 29542605 - 29542347
Alignment:
Q  8 atgtggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgcc 107  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  29542605 atgtggtgtctctaagacgaagcaatctattcttcaagtgatttggtttgcgactatgtgggagatttggaaggaaaggaataataggatttttaatgcc 29542506  T
Q  108 aaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggtt 207  Q
    || |||||||||||| | ||||||||||| |  ||||| || |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  29542505 aaggttagctctattatacaggtggtggacatgattaacttgctaactttccagtggttgaaggtgaagtttgtcactcttccctttaactatcatggtt 29542406  T
Q  208 ggtggcttagtccttttactttactgggaataggttaacaggtggatggtgttaagctg 266  Q
    ||||||||||||| ||||||||||| ||||| ||||||| ||||  |||||||||||||    
T  29542405 ggtggcttagtccatttactttactaggaattggttaacgggtgtttggtgttaagctg 29542347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 22533887 - 22534121
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  22533887 ggtgtctctaagacgaagcaatctatacttcaggtgatctggttcgcgactatgtggaagatttggaaggaaaggaataatatgatttttaatgccaaag 22533986  T
Q  112 ttagctctattttgcaggtggtggatagaattaa-gttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggt 210  Q
    | ||||||||| | |||||||||||||| ||||| |||  ||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||| ||||    
T  22533987 tgagctctattatacaggtggtggataggattaaggttgttaactttccagtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggt 22534086  T
Q  211 ggcttagtccttttactttactgggaataggttaa 245  Q
    |||||||||| ||||||||||| ||||||||||||    
T  22534087 ggcttagtccatttactttacttggaataggttaa 22534121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 41878577 - 41878816
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||| ||||||||| || ||||||||||| ||||| || ||||||||| | ||||||||||||||||| |||||||||||||||||||| |    
T  41878577 ggtgtctctaagacgaagcaatcgatacttcaggtgatatggtttgcgactatgtgggagatttggaaggaaaggaataataggatttttaatgccaagg 41878676  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    || ||| |||| | || |||||||| || |||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  41878677 ttggctatattatacaagtggtggacaggattaagttgctaactttccagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtg 41878776  T
Q  212 gcttagtccttttactttactgggaataggttaacaggtg 251  Q
    ||||||||| ||||||||||| ||||||||||||| ||||    
T  41878777 gcttagtccatttactttactaggaataggttaacgggtg 41878816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 42806503 - 42806274
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  42806503 ggtgtctctaagatgaagcaatctatccttcaggtgatctgtttcgcgactatgtgggagatttggaaggaaaggaataataggatttttaatgccaaag 42806404  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    | |||||||||   |||||||||||||| ||||||||  ||||||| | |||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  42806403 tgagctctattaaacaggtggtggataggattaagttgttaactttcctgtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtg 42806304  T
Q  212 gcttagtccttttactttactgggaatagg 241  Q
    ||||||||| || |||||||| || |||||    
T  42806303 gcttagtccattcactttacttggcatagg 42806274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 53877097 - 53876866
Alignment:
Q  10 gtggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaa 109  Q
    |||||||||||||    |||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||| ||| ||    
T  53877097 gtggtgtctctaaatccaagcaatctatcctccaggtgatttggtttgcaacaatgtggaagatttggaaggaaagaaataataggatttttattgcaaa 53876998  T
Q  110 agttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttgg 209  Q
     ||||| ||| || | ||||||||||| | |||||||||  | |||||  ||||| | |||||||||||||| ||||||||||||||||||||||| |||    
T  53876997 ggttagttctgttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtgg 53876898  T
Q  210 tggcttagtccttttactttactgggaatagg 241  Q
    |||||| |||| ||||||||||| || |||||    
T  53876897 tggcttggtccgtttactttactaggcatagg 53876866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 6925834 - 6926056
Alignment:
Q  10 gtggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaa 109  Q
    |||||||||||| |   ||||| ||||| || |||||||||||||| ||||| |||||| | |||||||||||||| || ||||||||||||||| | ||    
T  6925834 gtggtgtctctaggtccaagcactctattctccaggtgatttggtttgcaacaatgtgggagatttggaaggaaagaaataataggatttttaatacaaa 6925933  T
Q  110 agttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttgg 209  Q
     ||||| ||| || | ||||||||||| | |||||||||  | ||||   ||||| | |||||||||||||| ||||||||||||||||||||||| |||    
T  6925934 ggttagttctgttatacaggtggtggacaaaattaagttgttgacttacaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtgg 6926033  T
Q  210 tggcttagtccttttactttact 232  Q
    ||||||||||| ||||| |||||    
T  6926034 tggcttagtccgtttacattact 6926056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 90 - 241
Target Start/End: Complemental strand, 19979414 - 19979263
Alignment:
Q  90 aataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttc 189  Q
    ||||||||||||||||| || | ||| |||||| ||||||||||||| |  |||||| |  |||||||  ||||| |||||||||||||||| |||||||    
T  19979414 aataggatttttaatgcaaaggctagttctattctgcaggtggtggacatgattaagctgttaactttcaagtggttgaaggtgaagtttgtaactcttc 19979315  T
Q  190 cctttaattatcatggttggtggcttagtccttttactttactgggaatagg 241  Q
    ||||||| |||||||||||||||||||| || ||||||||||| | ||||||    
T  19979314 cctttaactatcatggttggtggcttagcccatttactttactagaaatagg 19979263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 47160903 - 47161078
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    |||||||||||||| || || | |||| ||||||||||||||||||| || || ||||||||| |||| |  ||||| |||||||| ||||||||||| |    
T  47160903 caggtgatttggtttgcgacaacgtgggaaatttggaaggaaaggaataacagaatttttaatcccaaggaaagctcaattttgcaagtggtggatagga 47161002  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttag 217  Q
    |||||||  |||||||| ||||| ||||||||||||||    ||||||| || ||||| |||||||||||||||||    
T  47161003 ttaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttag 47161078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 6894114 - 6894293
Alignment:
Q  48 atttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagt 147  Q
    |||||||| |||||  | ||| ||||||||||||||||||| |  || |||||||| || | || |||||| || || |||||||| ||||| |||||||    
T  6894114 atttggtttgcaacagtttgggaaatttggaaggaaaggaatagcagaatttttaaggctatagatagctcaatcttacaggtggtcgataggattaagt 6894213  T
Q  148 tactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttact 227  Q
    |||| |||||  | ||| |||||| || |||| | ||||||||||| |||||||||||||||||| ||||||| ||||||    
T  6894214 tactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgtttact 6894293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 3459258 - 3459309
Alignment:
Q  40 ttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaa 91  Q
    ||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||    
T  3459258 ttcaggttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaa 3459309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 37537293 - 37537238
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctta 216  Q
    |||| ||||||||||||| |   |||||||||||| ||||||||||||||||||||    
T  37537293 gtggttgaaggtgaagttcgcttctcttccctttacttatcatggttggtggctta 37537238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 25408827 - 25408863
Alignment:
Q  190 cctttaattatcatggttggtggcttagtccttttac 226  Q
    |||| |||||||||||||||||||||||||| |||||    
T  25408827 ccttcaattatcatggttggtggcttagtccatttac 25408863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 28400380 - 28400609
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  28400380 ggtgtctctaagatgaagcaatctatccttcaggtgatctggttcgcgactatgtgggagatttggaaggaaaggaataataggatttttaatgccaaag 28400479  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    | |||||||||   |||||||||||||| ||||||||  ||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  28400480 tgagctctattaaacaggtggtggataggattaagttgttaactttccagtggatgaaggtgaagtttgtcactcttccttttaactatcatgggtggtg 28400579  T
Q  212 gcttagtccttttactttactgggaatagg 241  Q
    ||||||||| || |||||||| || |||||    
T  28400580 gcttagtccattcactttacttggcatagg 28400609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 28442359 - 28442120
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||| ||||||| |||||||||||| ||||| ||||||||||| || ||||||||| | ||||||||||||||||| |||| ||||||||||||||| |    
T  28442359 ggtgtttctaagacgaagcaatctattcttcaagtgatttggtttgcgactatgtgggagatttggaaggaaaggaataatatgatttttaatgccaagg 28442260  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    ||||||||||| | || |||||||| |  |||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  28442259 ttagctctattatacacgtggtggacaacattaagttgctaactttccagtggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtg 28442160  T
Q  212 gcttagtccttttactttactgggaataggttaacaggtg 251  Q
    ||||||||| ||||||||| | ||||||||||||| ||||    
T  28442159 gcttagtccatttactttattaggaataggttaacgggtg 28442120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 5411624 - 5411853
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||  ||  |||||||| ||||||||||||||||| || || |||||||| ||||||||| ||| ||||||||| ||||||||||| || |    
T  5411624 ggtgtctctaagtcgagacaatctattcttcaggtgatttggtttgcgacaatgtggaagatttggaagcaaatgaacaatagaatttttaatgcaaagg 5411723  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
     || ||||||| |||| |||||||| || ||||||||  ||| |||  ||||| |||||||||||||||| |||||||||||||| ||||||||||| ||    
T  5411724 ataactctattatgcaagtggtggacaggattaagttgttaaatttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatggttgttg 5411823  T
Q  212 gcttagtccttttactttactgggaatagg 241  Q
    ||||||||| |||||||||||  |||||||    
T  5411824 gcttagtccgtttactttactaagaatagg 5411853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 48973534 - 48973756
Alignment:
Q  10 gtggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaa 109  Q
    ||||||||||||||  |||||||||||| || |||||||||||||| ||||| |||| | | |||||||||||||| || ||||| ||||||||||| ||    
T  48973534 gtggtgtctctaagtcgaagcaatctattctccaggtgatttggtttgcaacaatgtcggagatttggaaggaaagaaataatagaatttttaatgcaaa 48973633  T
Q  110 agttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttgg 209  Q
     ||||| ||| || | ||||||||||| | |||||||||  | |||||  ||||| | |||||||||||||| ||||||||||||||||||||||| |||    
T  48973634 ggttagttctgttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtgg 48973733  T
Q  210 tggcttagtccttttactttact 232  Q
    ||||||||||| ||||| |||||    
T  48973734 tggcttagtccgtttacattact 48973756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 45718248 - 45718437
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    |||||||| ||||| || || |||| | |||||||||||||||||||||| || ||||||||||| || | |||||| ||| ||||||||||||| |  |    
T  45718248 caggtgatctggtttgcgacaatgttggaaatttggaaggaaaggaacaacagaatttttaatgcaaaggatagctcaattatgcaggtggtggacaaga 45718347  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttact 232  Q
    |||||||  |||||||  ||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  45718348 ttaagttgttaactttgaagtggctgaagatgaaatttgccactcttccctttaattatcatggttggtggcttag-ccgtttactttact 45718437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 12688121 - 12688283
Alignment:
Q  70 aaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaa 169  Q
    ||||||||||||||||||| || |  ||||| || || |||| |||  | ||| |||||||||||||||  |||||||| ||||||||| ||||| ||||    
T  12688121 aaatttggaaggaaaggaaaaacataattttcaaggcaaaagatagtccaattatgcaggtggtggataagattaagttgctaacttttaagtggttgaa 12688220  T
Q  170 ggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttact 232  Q
    ||||||||||   |||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  12688221 ggtgaagtttccaactcttccctttaactatcatggatggtggcttagtccgtttactttact 12688283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 16909220 - 16909036
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||| | |||  |||||||||||||||| ||||| |||||| ||||||| |||| ||||  | ||||||||  |||||||||||| | |     
T  16909220 caggttatttggttaggaacagtgtggaaaatttggaaagaaagaaacaattggattttcaatgacaaacattgctctattcagcaggtggtggacaaag 16909121  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    ||||||  ||||||||   |||| |||||| ||| || |||| |||  || | |||||||||||||||||||||||||| |||||    
T  16909120 ttaagtctctaactttgatgtggttgaaggggaaattcgtcagtctctccctcaattatcatggttggtggcttagtccgtttac 16909036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 2653907 - 2653732
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||| |||||  ||||| |||||||||| ||||| |||||||||||||| || | ||||  | | ||||||  |||||||||||||| ||    
T  2653907 caggtcatttggtttgcaacggtgtgggaaatttggaaagaaagaaacaataggattttcaacgacaaaaattgttctattccgcaggtggtggataaaa 2653808  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttag 217  Q
    |||||| ||| |||||   |||| |||||| |||   ||||| | ||||| | ||||| |||||||||||||||||    
T  2653807 ttaagtcacttactttcacgtggttgaaggggaaacatgtcagtattcccctcaattaacatggttggtggcttag 2653732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 42476221 - 42476408
Alignment:
Q  33 tctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtgg 132  Q
    |||||| | ||||| |||||||| |||||  ||||| |||| ||||| ||||| || ||| ||||||| ||   |||| || ||||||||| ||||||||    
T  42476221 tctatcatacaggtcatttggtttgcaacagtgtgggaaatatggaaagaaagaaataatcggattttgaacaacaaaatttgctctatttcgcaggtgg 42476320  T
Q  133 tggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    |||| | ||| |||| ||||||||    |||| |||||| |||    |||| ||||||| | |||||||||||||||||||| |||||    
T  42476321 tggacaaaatcaagtcactaacttacaggtggttgaaggggaaacacgtcagtcttcccctcaattatcatggttggtggctaagtcc 42476408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 52251256 - 52251434
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||| |||||  | ||||||||||| || ||||| ||||||||||| || || | ||||  | | ||||||  |||||||||||| | ||    
T  52251256 caggttatttggtttgcaacagtctggaaaatttgaaaagaaagaaacaataggatcttcaacggcaaaaattgttctattgcgcaggtggtggacaaaa 52251355  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    | |||| ||| ||||||   ||| |||||| |||   || || ||||||| | || |||||||||||||||||||||||    
T  52251356 tcaagtcactgacttttacatggttgaaggggaaacatgacagtcttcccctcaactatcatggttggtggcttagtcc 52251434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 52626563 - 52626605
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  52626563 ctcttcccttcaattatcatggttggtggcttagtccatttac 52626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 8527053 - 8527118
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    ||||||||||| ||| |  |||| ||||||||| ||||||||||||||||| |||||||| |||||    
T  8527053 gtggctgaaggggaaatacgtcaatcttcccttcaattatcatggttggtgacttagtccatttac 8527118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 17128519 - 17128584
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    ||||||||||| ||| |  |||| ||||||||| ||||| ||| ||||||||||||||||||||||    
T  17128519 gtggctgaaggggaaatacgtcaatcttcccttcaattaccattgttggtggcttagtccttttac 17128584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 23997102 - 23997211
Alignment:
Q  117 tctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctta 216  Q
    |||||||| ||||||||||| |  ||||||| | | || |||  |||| ||||||||||  | ||  ||||| |||||||||||||||| || |||||||    
T  23997102 tctattttacaggtggtggacaagattaagtcagttacctttaggtggttgaaggtgaaactcgtttctctttcctttaattatcatggctgatggctta 23997201  T
Q  217 gtccttttac 226  Q
    ||||||||||    
T  23997202 gtccttttac 23997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 26260785 - 26260850
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||| |||||| ||||||||   |||||||||| ||||||||||| |||||||||||||| |||||    
T  26260785 gtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttac 26260850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 44675154 - 44675193
Alignment:
Q  186 cttccctttaattatcatggttggtggcttagtcctttta 225  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  44675154 cttcccttcaattatcatggttggtggcttagtccgttta 44675193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 9484879 - 9484937
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 219  Q
    |||| |||||| ||| |||||  |||||||||| |||||||||||||||||| ||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtc 9484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 29321538 - 29321304
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||| | ||||||||||||||||| ||||||||||||||||| || |    
T  29321538 ggtgtctctaagacgaagcaatctattcttcaggtgatttggtttgcgactatgtgggagatttggaaggaaaggaataataggatttttaatgcaaagg 29321439  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    |||| |||||| ||||||||||||| || ||||||||  ||||||| |||||| |||| |||||||||||||||||||||||||| ||| ||||||||||    
T  29321438 ttagttctattatgcaggtggtggacaggattaagttgttaactttccagtggttgaaagtgaagtttgtcactcttccctttaactatgatggttggtg 29321339  T
Q  212 gcttagtccttttactttactgggaataggttaac 246  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  29321338 gcttagtccatttactttactaggaataggctaac 29321304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 11298806 - 11298572
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||| || ||||||||| | ||||||||||||||||| ||||| ||||||||||| || |    
T  11298806 ggtgtctctaagacgaaacaatctattcttcaggtgatttggtttgcgactatgtgggagatttggaaggaaaggaataatagaatttttaatgcaaatg 11298707  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    ||||||||||| |||| || ||||| |  ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11298706 ttagctctattatgcatgtagtggacatgattaagttgttaacttttcagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtg 11298607  T
Q  212 gcttagtccttttactttactgggaataggttaac 246  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  11298606 gcttagtccatttactttactaggaataggctaac 11298572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 32533278 - 32533060
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||  || ||||||||| ||||||||||||||||| || ||||||||| |||||||||||||| ||||||| |  ||||||||| | || |    
T  32533278 ggtgtctctaagtcgaggcaatctattcttcaggtgatttggtttgcgactatgtgggaaatttggaaggaacggaacaacaaaatttttaattctaagg 32533179  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
     |||||||||| || ||||||||||||| ||||||||  |||| ||  ||||| ||||| |||||||||  |||||||||||||| ||||||||||||||    
T  32533178 atagctctattatgtaggtggtggataggattaagttgttaacattcaagtggttgaagatgaagtttgctactcttccctttaactatcatggttggtg 32533079  T
Q  212 gcttagtccttttacttta 230  Q
    ||||||||| || ||||||    
T  32533078 gcttagtccgttcacttta 32533060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 18015928 - 18015739
Alignment:
Q  43 aggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaat 142  Q
    |||| |||||||| |||||  | ||| |||||| ||||||||||||| | |  |||||||| || |||| |||| | ||| |||||||||||||||| ||    
T  18015928 aggttatttggtttgcaacggtatgggaaattttgaaggaaaggaacgacataatttttaaggcaaaagatagcccaattatgcaggtggtggataggat 18015829  T
Q  143 taagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttact 232  Q
    ||||||  |||| ||| ||||| ||  ||||||||||   |||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  18015828 taagttgttaacgtttaagtggttgggggtgaagtttacaactcttccctttaactatcatggttggtggcttactccgtttactttact 18015739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 5667549 - 5667364
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||| |||||  | ||| ||||||||||||||||||| || || |||||||| || | || |||||| || || |||||||| ||||| |    
T  5667549 caggttatttggtttgcaacagtttgggaaatttggaaggaaaggaataacagaatttttaaggctatagatagctcaatcttacaggtggtcgatagga 5667450  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttact 227  Q
    |||||||||| |||||  | ||| |||||  || |||| | |||||| |||| |||||||||||||||||| ||||||| ||||||    
T  5667449 ttaagttactgactttcaaatggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgtttact 5667364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 18671972 - 18672148
Alignment:
Q  64 tgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtg 163  Q
    ||||| ||||||||||||||||||  || |  ||||||||||| |||| |||||| ||| | |||| |||||| |  |||||||| ||||||| | ||||    
T  18671972 tgtgggaaatttggaaggaaaggattaacataatttttaatgcaaaagatagctcaattattcagggggtggacaagattaagttgctaacttataagtg 18672071  T
Q  164 gctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaatagg 241  Q
    | |||||||||||| | | |||||||||||||| ||||||||||||||||| ||||| || || ||||| || |||||    
T  18672072 gttgaaggtgaagtatct-actcttccctttaactatcatggttggtggctgagtccgttcaccttactaggcatagg 18672148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 18673307 - 18673464
Alignment:
Q  70 aaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaa 169  Q
    ||||||||||  |||| |||||||||||||| || | ||||  | | ||||||  |||||||||||||| ||||||||  || ||||||  |||| ||||    
T  18673307 aaatttggaaaaaaagaaacaataggattttcaacgacaaaaattgttctattccgcaggtggtggataaaattaagtctcttacttttatgtggttgaa 18673406  T
Q  170 ggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttact 227  Q
    || ||| | ||||| ||||||| | ||||||||||||||||||||||| || ||||||    
T  18673407 ggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgtttact 18673464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 15117351 - 15117247
Alignment:
Q  126 caggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcctttta 225  Q
    ||||||||||| |  |||||| | ||||||| | ||||| |||||||||||| ||  ||||||||||||||||||||||||||||||  ||||||||| |    
T  15117351 caggtggtggacatgattaagctgctaacttataagtggttgaaggtgaagtatgctactcttccctttaattatcatggttggtggagtagtcctttca 15117252  T
Q  226 cttta 230  Q
    |||||    
T  15117251 cttta 15117247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 11324380 - 11324560
Alignment:
Q  40 ttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatag 139  Q
    ||||||| |||||||| || ||  |||||||||||||||||||||| || || ||| | || |||| ||||||| ||||  || | ||| |||| || |     
T  11324380 ttcaggtcatttggtttgctacggtgtggaaaatttggaaggaaagaaataacaggctcttcaatgacaaagtttgctcggttcttcagatggtagacaa 11324479  T
Q  140 aattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
     |||||||| ||  |||||  |||| |||||| ||| ||||   |||||||||| ||||||||||| ||||||||||||||    
T  11324480 gattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtcc 11324560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 34018186 - 34018081
Alignment:
Q  48 atttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagt 147  Q
    ||||||||||| ||| ||||| |||| ||||||||||| || || |||||||||||||  |||| | |||| |||||||   | ||||| | ||||||||    
T  34018186 atttggttcgctactgtgtgggaaatatggaaggaaagaaataacaggatttttaatggtaaagattgctcgattttgcgtttagtggacaaaattaagt 34018087  T
Q  148 tactaa 153  Q
    ||||||    
T  34018086 tactaa 34018081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 10944170 - 10944208
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtcctt 222  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  10944170 ctcttccctttaattaccatggtttgtggcttagtcctt 10944208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 17292808 - 17292767
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtcctttta 225  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  17292808 ctcttcccttcaattatcatggttgatggcttagtccgttta 17292767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 22469479 - 22469515
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtcc 220  Q
    |||||||||| |||||||||| |||||||||||||||    
T  22469479 ctcttcccttcaattatcatgcttggtggcttagtcc 22469515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 31454074 - 31454046
Alignment:
Q  192 tttaattatcatggttggtggcttagtcc 220  Q
    |||||||||||||||||||||||||||||    
T  31454074 tttaattatcatggttggtggcttagtcc 31454046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 7179244 - 7179015
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| || || |||| | | ||||||||||||||||| ||||||||||||||||| || |    
T  7179244 ggtgtctctaagacgaagcaatctattcttcaggtgatttggtttgcgacaatgtaggagatttggaaggaaaggaataataggatttttaatgcaaagg 7179145  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    |||| |||||| |||| |||||||| | |||||||||  |||||||  ||||| |||||||||||||||| |||||||||||||| ||||||| ||||||    
T  7179144 ttagttctattctgcaagtggtggacataattaagttgttaactttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatgattggtg 7179045  T
Q  212 gcttagtccttttactttactgggaatagg 241  Q
    |||||||||  |||||||||| ||||||||    
T  7179044 gcttagtccaattactttactaggaatagg 7179015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 16489674 - 16489440
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||| | |||||||||||| |||| ||||||||||||||||||||||    
T  16489674 ggtgtctctaagacgaagcaatctatccttcaggtgatctggtacgcgactatgtgggagatttggaaggaacggaataataggatttttaatgccaaag 16489575  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    | |||||||||   |||||||||||||| ||||||||  ||||||| |||||| ||||||||||||||||   |||||  ||||| |||||| | |||||    
T  16489574 tgagctctattaatcaggtggtggataggattaagttgttaactttccagtggttgaaggtgaagtttgttcatcttctttttaactatcataggtggtg 16489475  T
Q  212 gcttagtccttttactttactgggaataggttaac 246  Q
    ||||||||| || |||||||| || ||||||||||    
T  16489474 gcttagtccattcactttacttggcataggttaac 16489440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 41255234 - 41255043
Alignment:
Q  29 gcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcag 128  Q
    ||||||||| ||||||||||||| ||  || ||||||||| |||| ||||||||||||||||| |  ||||||||||| ||   ||| || ||| |||||    
T  41255234 gcaatctattcttcaggtgatttagtgtgcgactatgtgggaaatatggaaggaaaggaacaacataatttttaatgctaagaatagttccattatgcag 41255135  T
Q  129 gtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    ||||||||| | |||||||||||||| ||  ||||| ||||||| || | ||    |||||||||||| |||||||||||||||||||||||    
T  41255134 gtggtggatcggattaagttactaacattcaagtggttgaaggttaactatgcttatcttccctttaactatcatggttggtggcttagtcc 41255043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 38685676 - 38685863
Alignment:
Q  43 aggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaat 142  Q
    |||| |||||||  |||||| ||||| ||||||||||||||||||| ||||| ||||||| ||| |||  ||| || ||  | ||||||||||| |  ||    
T  38685676 aggttatttggtgtgcaactgtgtgggaaatttggaaggaaaggaataatagaatttttattgcaaaacatagttcaatcgttcaggtggtggacatgat 38685775  T
Q  143 taagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttacttta 230  Q
    |||||| ||||||| | |||||  ||||||||||| ||  |||||||||||||| ||||||||||||||| ||||||| || ||||||    
T  38685776 taagttgctaacttataagtggtcgaaggtgaagtatgctactcttccctttaactatcatggttggtggattagtccgttcacttta 38685863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 220
Target Start/End: Original strand, 43776134 - 43776311
Alignment:
Q  43 aggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaat 142  Q
    |||| |||||||| |||||  ||||| |||||||||| ||||| || |||||||| || |||| |||| || ||||||||| ||||||||||||||  ||    
T  43776134 aggtcatttggtttgcaacagtgtgggaaatttggaaagaaagaaataataggatattcaatgacaaaatttgctctatttcgcaggtggtggataagat 43776233  T
Q  143 taagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    ||| |  ||||| |||  |||| |||||| ||| |  |||| ||| ||| | ||||||||||||||||||||| ||||    
T  43776234 taactctctaacctttatgtggttgaaggggaaatacgtcagtctacccctcaattatcatggttggtggctttgtcc 43776311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 38233202 - 38233320
Alignment:
Q  127 aggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||||||||| |  |||||| | ||||||| | ||||| |||||||||||| ||   |||||||||||||||||||||||||||||  ||||||||| ||    
T  38233202 aggtggtggacaagattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcac 38233301  T
Q  227 tttactgggaataggttaa 245  Q
    |||| | || |||||||||    
T  38233302 tttattaggcataggttaa 38233320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 33191387 - 33191209
Alignment:
Q  41 tcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggataga 140  Q
    |||||| |||||||| ||||| || ||| |||| ||||||||||| ||| | |   |||| ||||| |||| | |||||||| |||| |||||||| |||    
T  33191387 tcaggttatttggtttgcaacaatttgggaaatatggaaggaaagaaacgacaaatttttcaatgcaaaagattgctctattatgcacgtggtggacaga 33191288  T
Q  141 attaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
     |||||||  |||| |    |||| ||||| |||| ||||  ||||||||||| ||||||||||||||||||||||||||    
T  33191287 -ttaagttgttaacatacacgtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtcc 33191209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 38738367 - 38738525
Alignment:
Q  70 aaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaa 169  Q
    |||||||||| ||||| |||||||||||||| || | ||||  | | ||||||  |||| ||||||||| ||||||||  || ||||||  |||| ||||    
T  38738367 aaatttggaaagaaagaaacaataggattttcaacgacaaaaattgttctattccgcagatggtggataaaattaagtcccttacttttacgtggttgaa 38738466  T
Q  170 ggtgaagtt-tgtcactcttccctttaattatcatggttggtggcttagtccttttact 227  Q
    || |||    ||||| ||||||| | ||||||||||||||||||||||| || ||||||    
T  38738467 ggggaacacatgtcagtcttcccctcaattatcatggttggtggcttagcccgtttact 38738525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 37929141 - 37929200
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    |||| |||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  37929141 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 37929200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 8462555 - 8462520
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtc 219  Q
    |||||||||| |||||||||||||||||||||||||    
T  8462555 ctcttcccttcaattatcatggttggtggcttagtc 8462520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 38342849 - 38343076
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||  || |||||||||  ||||||||||||||||  | || |||||| | ||||||||||||||||||||||  ||||||||||| || |    
T  38342849 ggtgtctctaagtcgaggcaatctattattcaggtgatttggttaacgacaatgtgggagatttggaaggaaaggaacaatataatttttaatgcaaagg 38342948  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    || |||||||| |||| |||||||| || ||||||||  |||||||  ||||| ||||||||||| |||| |||||||||||||| ||||||||||||||    
T  38342949 ttggctctattatgcaagtggtggacaggattaagttgttaactttcaagtggttgaaggtgaagcttgtaactcttccctttaactatcatggttggtg 38343048  T
Q  212 gcttagtccttttactttactgggaata 239  Q
     |||| ||| ||||||||||| ||||||    
T  38343049 acttaatccgtttactttactaggaata 38343076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 40616948 - 40616719
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||  || ||||||||| ||||||||||||||||| || ||||||||| |||||| ||||||||||||| |  | ||||||||| | || |    
T  40616948 ggtgtctctaagtcgaggcaatctattcttcaggtgatttggtttgcgactatgtgggaaatttagaaggaaaggaacgacggaatttttaattctaagg 40616849  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
     |||||||||| |||||||||||||||| ||||||||  |||  ||  ||||| |||||||||||| ||  |||||||||||||| |||| |||||||||    
T  40616848 atagctctattatgcaggtggtggataggattaagttgttaaaattcaagtggttgaaggtgaagtatgctactcttccctttaactatcttggttggtg 40616749  T
Q  212 gcttagtccttttactttactgggaatagg 241  Q
    ||||||||| || |||||||| || |||||    
T  40616748 gcttagtccgttcactttactaggcatagg 40616719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 27854769 - 27854972
Alignment:
Q  14 tgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagtt 113  Q
    ||||||||||  || ||||||||| ||||||||||| ||||| || ||| ||||| ||||||||||||||||||| ||||| ||||||||| | || | |    
T  27854769 tgtctctaagtcgaggcaatctattcttcaggtgatatggtttgcgactttgtgggaaatttggaaggaaaggaataatagaatttttaattctaaggat 27854868  T
Q  114 agctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggc 213  Q
    ||||||||| |||||||||||||||| ||||||||  |||| ||  ||||| |||||||||||| ||  || ||||||||||| ||||||||||||||||    
T  27854869 agctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtggc 27854968  T
Q  214 ttag 217  Q
    ||||    
T  27854969 ttag 27854972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 34871565 - 34871685
Alignment:
Q  126 caggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcctttta 225  Q
    |||||||||||||| ||||||||  ||||||| |||||| ||||||||||||||||   |||||  ||||| |||||| | |||||||||||||| || |    
T  34871565 caggtggtggataggattaagttgttaactttccagtggttgaaggtgaagtttgttcatcttctttttaactatcataggtggtggcttagtccattca 34871664  T
Q  226 ctttactgggaataggttaac 246  Q
    ||||||| || ||||||||||    
T  34871665 ctttacttggcataggttaac 34871685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 11884268 - 11884418
Alignment:
Q  29 gcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcag 128  Q
    |||||||||  | ||||| |||||||| || ||| | ||| |||||||||||||||||||||| |  |||||||| || |||| |||| | ||| | |||    
T  11884268 gcaatctattttacaggttatttggtttgcgactgtatgggaaatttggaaggaaaggaacaacaaaatttttaaggcaaaagatagcccaattatacag 11884367  T
Q  129 gtggtggatagaattaagttactaacttttcagtggctgaaggtgaagttt 179  Q
    |||||||| || ||||||||  |||||||| ||||| ||||||||||||||    
T  11884368 gtggtggacaggattaagttgttaacttttaagtggttgaaggtgaagttt 11884418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 3535817 - 3535873
Alignment:
Q  210 tggcttagtccttttactttactgggaataggttaacaggtggatggtgttaagctg 266  Q
    ||||||||||| |||||||||||  |||||||||||||||||| |||||||||||||    
T  3535817 tggcttagtccatttactttactatgaataggttaacaggtggttggtgttaagctg 3535873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 8566872 - 8566778
Alignment:
Q  126 caggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    |||||||||||||| |||||||| |||||||| || ||| | ||||||||||||  || |||||| ||||| ||| |||||||| |||| |||||    
T  8566872 caggtggtggataggattaagttgctaactttccattggttaaaggtgaagttttccaatcttccttttaactataatggttggcggctaagtcc 8566778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 37137251 - 37137344
Alignment:
Q  43 aggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtgga 136  Q
    ||||||||||||| || || | |||| ||||||||||||||||||| || |  |||||||||||||| |  ||||| || ||||| ||||||||    
T  37137251 aggtgatttggtttgcgacaacgtgggaaatttggaaggaaaggaataacataatttttaatgccaaggaaagctcaatattgcaagtggtgga 37137344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 9491032 - 9490968
Alignment:
Q  36 atccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttt 100  Q
    ||||||||||| |||||||| |||||  |||||||||||||||| ||||| || || ||||||||    
T  9491032 atccttcaggttatttggtttgcaacactgtggaaaatttggaaagaaagaaataacaggatttt 9490968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 24905257 - 24905193
Alignment:
Q  36 atccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttt 100  Q
    ||||||||||| |||||||| |||||  ||||| |||||||||| ||||||||||| | ||||||    
T  24905257 atccttcaggttatttggtttgcaacagtgtgggaaatttggaaagaaaggaacaacatgatttt 24905193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 34237214 - 34237250
Alignment:
Q  187 ttccctttaattatcatggttggtggcttagtccttt 223  Q
    ||||||| |||||||||||||||||||||||||||||    
T  34237214 ttcccttcaattatcatggttggtggcttagtccttt 34237250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 9628252 - 9628298
Alignment:
Q  180 gtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  9628252 gtcaatcttcccttcaattaccatggttggtggcttagtccgtttac 9628298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 21041832 - 21042054
Alignment:
Q  10 gtggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaa 109  Q
    ||||||||||||||  |||||||||||| || || ||||||||||| ||||| |||||| | |||||||||||||| || ||||||||||||||||| ||    
T  21041832 gtggtgtctctaagtcgaagcaatctattctccaagtgatttggtttgcaacaatgtgggagatttggaaggaaagaaataataggatttttaatgcaaa 21041931  T
Q  110 agttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttgg 209  Q
     ||||| ||| || | ||||||||||| | |||||||||  | |||||  ||||| |  ||||||||||||| ||||||||||||||||||||||| |||    
T  21041932 ggttagttctgttatacaggtggtggacaaaattaagttgttgactttcaagtggttataggtgaagtttgtaactcttccctttaattatcatgggtgg 21042031  T
Q  210 tggcttagtccttttactttact 232  Q
    ||||||||||| ||||| |||||    
T  21042032 tggcttagtccgtttacattact 21042054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 7961358 - 7961129
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    |||| |||||||  || ||||||||| ||||||||||||||||| || ||||||||| |||| ||||||||||| ||||| |  ||||||||||| || |    
T  7961358 ggtggctctaagtcgaggcaatctattcttcaggtgatttggtttgcgactatgtgggaaatatggaaggaaagaaacaacataatttttaatgctaatg 7961259  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
     |||| | ||| |||||||||||||||| |||||||| ||||| ||  ||||| |||||| ||||| ||  |||||||  ||||| ||||||||||||||    
T  7961258 atagcgccattatgcaggtggtggataggattaagttgctaacattcaagtggttgaaggcgaagtatgctactcttcattttaactatcatggttggtg 7961159  T
Q  212 gcttagtccttttactttactgggaatagg 241  Q
    ||||||| | || |||||||| || |||||    
T  7961158 gcttagttcgttcactttactaggcatagg 7961129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 32018194 - 32017992
Alignment:
Q  16 tctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttag 115  Q
    ||||||||  || ||||||||| ||||||||||| ||||| || ||| ||||| ||||||||||||||||||| |||||  |||||||| | || | |||    
T  32018194 tctctaagtcgaggcaatctattcttcaggtgatatggtttgcgactttgtgggaaatttggaaggaaaggaataatagattttttaattcgaaggatag 32018095  T
Q  116 ctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctt 215  Q
    | ||||| |  ||||||||||||| ||||||||  |||||||  ||||| |||||||| ||| ||  |  ||||||||||||||||||||||||||||||    
T  32018094 ccctattatagaggtggtggataggattaagttgttaactttcaagtggttgaaggtgcagtatgctaaccttccctttaattatcatggttggtggctt 32017995  T
Q  216 agt 218  Q
    |||    
T  32017994 agt 32017992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 7465138 - 7465341
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||  |||||| | ||| |||||||||||||||||||||| |  ||||||||||  |||   || || ||| |  |||||||||| |  |    
T  7465138 caggttatttggtgtgcaactgtttgggaaatttggaaggaaaggaacaacaaaatttttaatgataaacacagttcaattgtttaggtggtggacaaga 7465237  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaatagg 241  Q
    ||||| | ||||||| | ||||| |||||||||||| ||   |||||||||||||||||||||||||||||  ||||||||| |||||| | || |||||    
T  7465238 ttaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcactttattaggcatagg 7465337  T
Q  242 ttaa 245  Q
    ||||    
T  7465338 ttaa 7465341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 8487965 - 8488164
Alignment:
Q  42 caggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaa 141  Q
    ||||| |||||||| |||||  ||||| |||| ||||| ||||| || ||| ||||||| ||   |||| || |||||||||||||||||||||| | ||    
T  8487965 caggttatttggtttgcaacagtgtgggaaatatggaaagaaagaaataatcggattttcaacaacaaaatttgctctattttgcaggtggtggacaaaa 8488064  T
Q  142 ttaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaatagg 241  Q
    | |||||||||||||    |||| |||||| |||    |||  ||||||| | |||||||||||||||||||| ||||| ||| || | || ||||||||    
T  8488065 tcaagttactaacttacaggtggttgaaggagaaacacgtctgtcttcccctcaattatcatggttggtggctaagtccgttttctattctcggaatagg 8488164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 29994642 - 29994718
Alignment:
Q  151 taacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttact 227  Q
    |||||||| ||||| ||||||||||||||     ||||||||| |||||||||||||||||||||| ||| ||||||    
T  29994642 taacttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttact 29994718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 16610614 - 16610667
Alignment:
Q  173 gaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||||||||  |||||||||| ||||||||||| |||||||||||||| |||||    
T  16610614 gaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttac 16610667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 12831578 - 12831494
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaataggttaa 245  Q
    |||| |||||||||| |||  ||| |||||||| |||| ||||||||||||||||||||| || ||| |  |||| |||||||||    
T  12831578 gtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcactatgttgggcataggttaa 12831494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 12863553 - 12863469
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaataggttaa 245  Q
    |||| |||||||||| |||  ||| |||||||| |||| ||||||||||||||||||||| || ||| |  |||| |||||||||    
T  12863553 gtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcactatgttgggcataggttaa 12863469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 39839961 - 39839997
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtcc 220  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39839961 ctcttccctttaactatcatggttggtggcttagtcc 39839997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 8006827 - 8006874
Alignment:
Q  180 gtcactcttccctttaattatcatggttggtggcttagtccttttact 227  Q
    |||| ||||||||| |||||||||||||||||||| ||||| ||||||    
T  8006827 gtcagtcttcccttcaattatcatggttggtggctcagtccatttact 8006874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 32252175 - 32252218
Alignment:
Q  183 actcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||||||| || |||||||||||||||||||||||||| |||||    
T  32252175 actcttcctttcaattatcatggttggtggcttagtccgtttac 32252218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 26778784 - 26778719
Alignment:
Q  161 gtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||| |||||||||| ||| |  ||||| |||| |||||||||||||||||| ||||||| |||||    
T  26778784 gtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttac 26778719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 11980002 - 11980030
Alignment:
Q  72 atttggaaggaaaggaacaataggatttt 100  Q
    |||||||||||||||||||||||||||||    
T  11980002 atttggaaggaaaggaacaataggatttt 11980030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 24739702 - 24739910
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    |||||||||||   || ||||||||| ||||||||||| ||||| || ||| ||||| |||| |||||||||||||| ||||| ||||||||| | || |    
T  24739702 ggtgtctctaaatcgaggcaatctattcttcaggtgatatggtttgcgactttgtgggaaatctggaaggaaaggaataatagaatttttaattctaagg 24739801  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
    ||||||||||| |||||||||||||||| ||||||||  |||| ||  ||||| |||||||||||| ||  || ||||||||||| ||||||||||||||    
T  24739802 ttagctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtg 24739901  T
Q  212 gcttagtcc 220  Q
    |||||||||    
T  24739902 gcttagtcc 24739910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 841762 - 841533
Alignment:
Q  12 ggtgtctctaagatgaagcaatctatccttcaggtgatttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||||||||  || ||||||||| || |||||||||||||| || ||| ||||| |||||||||||||||||||||| |   ||||||||   || |    
T  841762 ggtgtctctaagtcgaggcaatctattctccaggtgatttggtttgcgactttgtgggaaatttggaaggaaaggaacaacaaattttttaattataagg 841663  T
Q  112 ttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 211  Q
     |||||||||| |||||||||||||||| ||||||||  |||  ||  ||||| |||||||||||| ||  |||||||||||||| ||||||||||||||    
T  841662 atagctctattatgcaggtggtggataggattaagttgttaatattcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtg 841563  T
Q  212 gcttagtccttttactttactgggaatagg 241  Q
    ||||||||  || |||||||| || |||||    
T  841562 gcttagtctgttcactttactaggcatagg 841533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 40427088 - 40426920
Alignment:
Q  64 tgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtg 163  Q
    ||||||||||||||||||||||||| || |  |||||||| || |||| |||||| ||| ||||||||||||| || |||||||| ||||||| | |||     
T  40427088 tgtggaaaatttggaaggaaaggaataacataatttttaacgcaaaagatagctcaattatgcaggtggtggacaggattaagttgctaacttgtaagta 40426989  T
Q  164 gctgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttact 232  Q
    | |||| ||||||| ||| |||||||||||||| ||||||||||||||||||| ||| || ||||||||    
T  40426988 gttgaaagtgaagtatgttactcttccctttaactatcatggttggtggcttaatccgttcactttact 40426920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 1997857 - 1997678
Alignment:
Q  66 tggaaaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggc 165  Q
    ||||||||||||||||||| ||  || | ||||||| |||  |||  ||| || ||| | ||||||||||| |  |||||| | ||||||| | |||||     
T  1997857 tggaaaatttggaaggaaaagattaacatgatttttgatgataaacatagttcaattgttcaggtggtggacatgattaagctgctaacttataagtggt 1997758  T
Q  166 tgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttactttactgggaataggttaa 245  Q
    |||||||||||| ||   |||||||||||||||||||||||||||||  ||||||||| |||||| | || |||||||||    
T  1997757 tgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttcactttattaggcataggttaa 1997678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 8090525 - 8090567
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||||||||| ||||||||||| |||||||||||||| |||||    
T  8090525 ctcttcccttcaattatcatgggtggtggcttagtccgtttac 8090567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 27009255 - 27009297
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||||||||| ||||| |||||||||||||||||||| |||||    
T  27009255 ctcttcccttcaattaccatggttggtggcttagtccgtttac 27009297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 38332223 - 38332161
Alignment:
Q  49 tttggttcgcaactatgtggaaaatttggaaggaaaggaacaataggatttttaatgccaaag 111  Q
    ||||||| || ||| |||||||||||||||| ||||| ||||| | |||||||||||| ||||    
T  38332223 tttggtttgctactgtgtggaaaatttggaaagaaagaaacaacatgatttttaatgctaaag 38332161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 45131168 - 45131126
Alignment:
Q  184 ctcttccctttaattatcatggttggtggcttagtccttttac 226  Q
    |||||||||| ||||||||||| |||||||||||||| |||||    
T  45131168 ctcttcccttcaattatcatgggtggtggcttagtccatttac 45131126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 6448 - 6598
Alignment:
Q  70 aaatttggaaggaaaggaacaataggatttttaatgccaaagttagctctattttgcaggtggtggatagaattaagttactaacttttcagtggctgaa 169  Q
    |||||||||||||||| || | |||||||||||| ||   || |||| ||||| | |||||||| ||||| |||||||| ||||||||  | ||| | ||    
T  6448 aaatttggaaggaaagaaatagtaggatttttaaggcgttagatagcactattattcaggtggtagataggattaagttgctaactttcaattggttaaa 6547  T
Q  170 ggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 220  Q
    ||||||||||   |||||||||||||| ||||||||||||||||| |||||    
T  6548 ggtgaagtttacaactcttccctttaactatcatggttggtggctaagtcc 6598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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