View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595-Insertion-13 (Length: 253)
Name: NF5595-Insertion-13
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595-Insertion-13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 6602659 - 6602414
Alignment:
| Q |
8 |
agtgctacaagaaaataacttcaagacacaataaaagtaggaaattatagtattgttcggaagcaaaatctcaacaaatccgtaaaggaatattaacgat |
107 |
Q |
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| T |
6602659 |
agtgctacaagaaaataacttcaagacacaataaaagtaggaaattatagtattgttcggaagcaaaatctcaacaaatccgtaaaggaatattaacgat |
6602560 |
T |
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| Q |
108 |
aaataaggattcaagaagatatttacctttccaagctaatagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagtcgatactg |
207 |
Q |
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| T |
6602559 |
aaataaggattcaagaagatatttacctttccaagctaatagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagtcgatactg |
6602460 |
T |
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| Q |
208 |
acttcagaggatatttgtatacaatacaaaatgtgtctaattgata |
253 |
Q |
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| T |
6602459 |
acttcagaggatatttgtatacaatacaaaatgtgtctaattgata |
6602414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 3700887 - 3701131
Alignment:
| Q |
10 |
tgctacaagaaaataacttcaagacacaataaaagtaggaaattatagtattgttcggaagcaaaatctcaacaaatccgtaaaggaatattaacgataa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| |||| |
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| T |
3700887 |
tgctacaagaaaataacttcaagacacaataaaagtaggaaataatagtattgttaggaagtgaaatctcaacaaatccttaaaggaatattccaaataa |
3700986 |
T |
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| Q |
110 |
ataaggattcaagaagatatttacctttccaagctaatagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagtcgatactgac |
209 |
Q |
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| T |
3700987 |
ataaggattcaagaagatccttacctttccaagctagtagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagtcgataccaac |
3701086 |
T |
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| Q |
210 |
ttcagaggatatt-tgtatacaatacaaaatgtgtctaattgata |
253 |
Q |
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| T |
3701087 |
ttcagaggatattctgtatataatacaaaatgtgtctgattgata |
3701131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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