View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595-Insertion-14 (Length: 230)
Name: NF5595-Insertion-14
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595-Insertion-14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 5347001 - 5347225
Alignment:
| Q |
6 |
cacaaggagggtgtcaaatctgaaacacctagtctcaaggtccacctcacaaacgcaaccaaccatgttgatagcagcgttccgcctcaatctcaagctc |
105 |
Q |
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| T |
5347001 |
cacaaggagggtgtcaaatctaaaacacctagtctcaaggtccacctcacaaacgcaaccaaccatgttgatagcagcgttctgcctcaatctcaagctc |
5347100 |
T |
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| Q |
106 |
ccaaacggaactagcttcaaacagaggcataacgaagaacccagatccaataaaaacttatgaaaaaactcaataacatatacttcctctattcctttta |
205 |
Q |
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||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5347101 |
ccaaacggaactagcttcaaacagaggcacagcgaggaacccaaatccaataaaaacttatgaaaaaactcaataacatatacttcctctattcctttta |
5347200 |
T |
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| Q |
206 |
aaaacctcaacaacacctacctctc |
230 |
Q |
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|||| ||||||| |||||||||||| |
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| T |
5347201 |
aaaagctcaacagcacctacctctc |
5347225 |
T |
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