View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595-Insertion-18 (Length: 151)
Name: NF5595-Insertion-18
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595-Insertion-18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 3e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 49180247 - 49180164
Alignment:
| Q |
68 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaaggacaaatttagtgattttcacctttaatga |
151 |
Q |
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| T |
49180247 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaaggacaaatttagtgattttcacctttaatga |
49180164 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 49180385 - 49180320
Alignment:
| Q |
8 |
actgcattaaacaaagaatttaacaggaatccttccccgcgttcaatagcaactagcagcattttc |
73 |
Q |
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| T |
49180385 |
actgcattgaacaaagaatttaacaggaatccttccccgcgttcaatagcaactagcagcattttc |
49180320 |
T |
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