View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595-Insertion-2 (Length: 1080)
Name: NF5595-Insertion-2
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 468 - 850
Target Start/End: Complemental strand, 5016609 - 5016229
Alignment:
| Q |
468 |
aagaaatagaagattgaacatattggtagaaataacacaaaaataaaataaaataccaggggttcgtgattcttatccttgttcttgatttccatagtga |
567 |
Q |
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| T |
5016609 |
aagaaatagaaaattgaacatattggtagaaataacacaaaaataaaataaaataccaggggttcgtgattcttatccttgttcttggtttccatagtga |
5016510 |
T |
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| Q |
568 |
gggatattcatataaggtacgagtgttacaattataacctagagtgaagtatagccaattggtggcaaactgtgaattcaagcattaagggttttgacca |
667 |
Q |
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| T |
5016509 |
gggatattcgtataaggtacgagtgttacaactataacctagagtgaagtatagccaattggtggcaaactgtgaattcaagca-taagggttttgacca |
5016411 |
T |
|
| Q |
668 |
aagtccaaacggcacatatgaaagtaggaaatggatttggtgtgactacttggttggatactcaaagtgttgttttagattttgtctctggtgcttgtat |
767 |
Q |
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| T |
5016410 |
aagtccaaacggcacatatgaaagtaggaaatggatttggtgtgactacttggttggatactc-aagtgttgttttagattttgtctctggtgcttgtat |
5016312 |
T |
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| Q |
768 |
tgtaagttgtaacttcacatggggaatggctacttatgtgcattgcatttccatctttatcaattactcccatttaagactaa |
850 |
Q |
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| T |
5016311 |
tgtaagttgtaacttcacatggggaatggctacttatgtgcattgcatttccatctttatcaattactcccatttaagactaa |
5016229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 5017477 - 5017200
Alignment:
| Q |
8 |
gctccgaacagctgagtcggctgaaatacctgagccccttgttgaggatatggtaactgctgctgccatggtgcttgagtggcagtctgaggaaaacaag |
107 |
Q |
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| T |
5017477 |
gctccgaacagctgagtcggctgaaatacctgcgccccttgttgaggatatggtaactgctgctgccatggtgcttgagtggcagtctgaggaaaacaag |
5017378 |
T |
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| Q |
108 |
gccactgaaacattgatggttgttgaggatttgagttaggcacattgtcaggcgaagaattactactactgttgctgtcaagagccatatctggttcaac |
207 |
Q |
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| T |
5017377 |
gccaatgaaacattgatggttgttgaggatttgagttaggcacattgtcaggcgaataattactactactgttgctgtcaagagccatatctggttcaac |
5017278 |
T |
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| Q |
208 |
tttgtcttgcttgttctgttaatcatattcatcttaataaaatgaaaatggggcgaattgaaatagacaaaaatgtaa |
285 |
Q |
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| T |
5017277 |
tttgtcttgcttgttctgttaatcatattcatcttaataaaatgaaaatggggcgaattgaaatagacaaaactgtaa |
5017200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 281 - 427
Target Start/End: Complemental strand, 5016750 - 5016606
Alignment:
| Q |
281 |
tgtaagtatacaattgtctcaatttgttagaaataataaaaatgttaaaagttatttttaataaatacatcattagcatttcatcttcaaatgcaaatgt |
380 |
Q |
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| T |
5016750 |
tgtaagtatacaattgtctcaatttgttagaaataataaaaatgttaaaagttatttt-aataaatacatcattagcatttcatcttcaaatgcaaatgt |
5016652 |
T |
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| Q |
381 |
ctcaaatctcgtcattaacaaagctaaaacgaaggagaaagcgaaga |
427 |
Q |
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| T |
5016651 |
ctcaaatctcgtcattaac-aagctaaaacgaaggagaaagcgaaga |
5016606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 900 - 1015
Target Start/End: Complemental strand, 5016214 - 5016098
Alignment:
| Q |
900 |
tattcattataggccacattggtaattttcaataaaaatannnnnnnnaaattgatttgaaa-tatgcacgttcttttctttttt-actgctccagggaa |
997 |
Q |
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| T |
5016214 |
tattcattataggccacattggtaattttcaataatttttttttttttaaattgatttgaaaatatgcacgttcttttcttttttaactgctccaggaaa |
5016115 |
T |
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| Q |
998 |
ttcgcctcctttttcaga |
1015 |
Q |
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| T |
5016114 |
ttcg-ctcctttttcaga |
5016098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 5005339 - 5005292
Alignment:
| Q |
208 |
tttgtcttgcttgttctgttaatcatattcatcttaataaaatgaaaa |
255 |
Q |
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| T |
5005339 |
tttgtcctgcgtgttctgctaatcatattcatcttaatcaaatgaaaa |
5005292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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