View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5595-Insertion-3 (Length: 875)

Name: NF5595-Insertion-3
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5595-Insertion-3
NF5595-Insertion-3
[»] chr3 (1 HSPs)
chr3 (12-875)||(7144432-7145287)


Alignment Details
Target: chr3 (Bit Score: 737; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 12 - 875
Target Start/End: Original strand, 7144432 - 7145287
Alignment:
Q  12 catctcgacaaataaaccatgaccatgacatctacttgatacgatctactacctccaacatgtttggttaatgagggtgtcgttgcgctccaaccaaata 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7144432 catctcgacaaataaaccatgaccatgaaatctacttgatacgatctactacctccaacatgtttggttaatgagggtgtcgttgcactccaaccaaata 7144531  T
Q  112 gattacgctgttagtaacttaatcaaatgaggatactctttcctttcttccctatgcataacgaatttaatagaagaaaattctcgaccaatttatctcc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  7144532 gattacgctgttagtaacttaatcaaatgaggatactctttcctt--------atgcataacgaatttaatagaagaaaattctcgaccaatttatctcc 7144623  T
Q  212 ccgtccagttagtc-ctttccaatgaagccaattgaatgtcaaatccagaaagtgacttgcggtttcaatctcattaaaacataaaatacaatgcgcatc 310  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  7144624 ccgtccagttagttactttccaatgaagccaattgaatgtcaaatccagaaagtgacttgcggtttcaatctcataaagacagaaaatacaatgcgcatc 7144723  T
Q  311 gcggatcaccccctcttctccataattcgacacggttggaagtctatcttgtaaaactccccaaccaagcatgcaaattta-ttagatggcactgttgtt 409  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||    
T  7144724 gcggatcaccccctcttctccataattcgacacggttggaagcctatcttgtaagactccccaaccaaacatgcaaatttaattggatggcactgttgtt 7144823  T
Q  410 ggtcataatcgctgcatgtctgcccagaattcattggcgaaatcattgtgaaaacataaattgcacatctcttgataaatccttttacggagaacccatt 509  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7144824 ggtcataatcgctgcatggctgcccagaattcattgtcgaaatcattgtgaaaacataaattgcacatctcttgataaatccttttacggagaacccatt 7144923  T
Q  510 gcactcgtccggcaagcattttacaacatctgacacgccttttagcagctgtatatcaaacagaaacagctttatatctgatatcgctgttcagatttgg 609  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7144924 gcactcgtccggcaaccattttacaacatctgacacgccttttagcagctgtgtatcaaacagaaacagctttatatctgatatcgctgttcagatttgg 7145023  T
Q  610 ctgccagcaccagttcgaacctgttgcccgcctagttcttattctgcaacagccaatccatacagttcaagaaattgaaaattgattcgttggaattacc 709  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7145024 ctgccatcaccagttcgaacctgttgcccacctagttcttattctgcaacagccaatccatacagttcaagaaattgaaaattgattcgttggaattacc 7145123  T
Q  710 tgtccataattcactctaaaataatatattttcaccaattcccatttcacttctgataagttttgggaaatcagtttgggttcaattgagcataaatcac 809  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  7145124 tgtccataattcactccaaaataatatattttcaccaattcccatttcacttctgataagtttt-ggaaatcagttt-ggttcaattgagcataaatcac 7145221  T
Q  810 aacaccataacaaatccaaccatcctccaatctccactgtccgggctgagcaaattttgttattgt 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7145222 aacaccataacaaatccaaccatcctccaatctccactgtccgggctgagcaaattttgttattgt 7145287  T

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