View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595-Insertion-6 (Length: 660)
Name: NF5595-Insertion-6
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 7 - 660
Target Start/End: Original strand, 2022557 - 2023211
Alignment:
| Q |
7 |
aataaggacaaggaaaagtt-agtcctgtttacttcctaaccacatttacagttttcagtgtcaactttgactttttatgtgacgaatgacaaaagatgg |
105 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2022557 |
aataaggacaaggaaaagtttagtcctgtttacttcctaaccacatttacagttttcagtgtcaactttgactttgtatgtgacgaatgacaaaagatgg |
2022656 |
T |
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| Q |
106 |
aagcttactagaaattatgcatttccagaaataccgaaaacaatgttttcaaaattttcaataactttcaatctattttcaacatgcattttaaaaaact |
205 |
Q |
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| T |
2022657 |
aagcttactagaaattatgcatttccagaaataccgaaaacaatgttttcaaaattttcaataactttcaatctattttcaacatgcattttaaaaaact |
2022756 |
T |
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| Q |
206 |
tccacactgttgtatgtaatacatattttatctgtgaagatggaataaggaaacagtagaagttaacgaccctaacgattttcgtgacttgtttataggg |
305 |
Q |
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| T |
2022757 |
tccacactgttgtatgtaatacatattttatctgtgaagatggaataaggaaacagtagaagttaacgaccctaacgattttcgtgacttgtttataggg |
2022856 |
T |
|
| Q |
306 |
aaaacctgacttgggactagttcaagcaagatggtcatatgtgaacaaagatgagaatctactaacaaggcttcaaaacatcaacttgtgttttcacttt |
405 |
Q |
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| T |
2022857 |
aaaacctgacttgggactagttcaagcaagatggtcatatgtgaacaaagatgagaatctactaacaaggcttcaaaacatcaacttgtgttttcacttt |
2022956 |
T |
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| Q |
406 |
gaggttgaacaacaagtgaatggctatttcttgaatttcttcggattcaatggaacagctggtgtttggaggataaaggctttggaggaatcaggcggtt |
505 |
Q |
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| T |
2022957 |
gaggttgaacaacaagtgaatggctatttcttgaatttcttcggattcaatggaacagctggtgtttggaggataaaggctttggaggaatcaggcggtt |
2023056 |
T |
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| Q |
506 |
ggttggagaggacgacagttgaggacatggacatagctgttagagctcatttgaatggatggaaattcatatatcttaatgatgttaaagttctttgtga |
605 |
Q |
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| T |
2023057 |
ggttggagaggacgacagttgaggacatggacatagctgttagagctcatttgaatggatggaaattcatatatcttaatgatgttaaagttctttgcga |
2023156 |
T |
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| Q |
606 |
attacctgaatcttatgaagcttacaagaaacaacaacatcgttggcattctggt |
660 |
Q |
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| T |
2023157 |
attacctgaatcttatgaagcttacaagaaacaacaacatcgttggcattctggt |
2023211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 319 - 575
Target Start/End: Complemental strand, 47777869 - 47777613
Alignment:
| Q |
319 |
ggactagttcaagcaagatggtcatatgtgaacaaagatgagaatctactaacaaggcttcaaaacatcaacttgtgttttcactttgaggttgaacaac |
418 |
Q |
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| T |
47777869 |
ggacttgtgcaagctagatggtcttttgtgaacaaggatgagaaccttttaacaaggttgcagaatattaatctgtgtttccattttgaagtggaacaac |
47777770 |
T |
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| Q |
419 |
aagtgaatggctatttcttgaatttcttcggattcaatggaacagctggtgtttggaggataaaggctttggaggaatcaggcggttggttggagaggac |
518 |
Q |
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| T |
47777769 |
aagtgaatagtgttttccttaatttctttgggttcaatggtactgctggagtttggagaataaaggctttggaagaagctggtggttggttggagaggac |
47777670 |
T |
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| Q |
519 |
gacagttgaggacatggacatagctgttagagctcatttgaatggatggaaattcat |
575 |
Q |
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| T |
47777669 |
cactgtggaggatatggacattgctgttcgagctcatcttcatggatggaaattcat |
47777613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 44128881 - 44128936
Alignment:
| Q |
99 |
aagatggaagcttactagaaattatgcatttccagaaataccgaaaacaatgtttt |
154 |
Q |
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| T |
44128881 |
aagatggaagctaactagaaaaaatgcatttccagaaatacttaaaacaatatttt |
44128936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 660
Target Start/End: Complemental strand, 47777493 - 47777434
Alignment:
| Q |
601 |
tgtgaattacctgaatcttatgaagcttacaagaaacaacaacatcgttggcattctggt |
660 |
Q |
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| T |
47777493 |
tgtgagttacctgaatcttatgaagcttacagaaaacagcagcatagatggcattctggt |
47777434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 50403226 - 50403189
Alignment:
| Q |
439 |
aatttcttcggattcaatggaacagctggtgtttggag |
476 |
Q |
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| T |
50403226 |
aatttcttcggtttcaatggaactgctggtgtttggag |
50403189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 302 - 485
Target Start/End: Original strand, 472656 - 472839
Alignment:
| Q |
302 |
agggaaaacctgacttgggactagttcaagcaagatggtcatatgtgaacaaagatgagaatctactaacaaggcttcaaaacatcaacttgtgttttca |
401 |
Q |
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| T |
472656 |
agggaaatcctgagttggcattggttcaagctaggtggacttttgtgaacaaggaagagaacttactcacaagacttcaaaatattaatttgtgcttcca |
472755 |
T |
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| Q |
402 |
ctttgaggttgaacaacaagtgaatggctatttcttgaatttcttcggattcaatggaacagctggtgtttggaggataaaggc |
485 |
Q |
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| T |
472756 |
ctttgaagttgaacaacaagttaatggaatcttccttaacttttttggttttaatggaactgctggtgtttggagaataaaggc |
472839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 610 - 656
Target Start/End: Original strand, 473386 - 473432
Alignment:
| Q |
610 |
cctgaatcttatgaagcttacaagaaacaacaacatcgttggcattc |
656 |
Q |
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| T |
473386 |
cctgaatcatatgaagcttataagaaacaacaacatcgatggcattc |
473432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 29783852 - 29783888
Alignment:
| Q |
122 |
atgcatttccagaaataccgaaaacaatgttttcaaa |
158 |
Q |
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| T |
29783852 |
atgcatttctagaaataccgaaaacaatgctttcaaa |
29783888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 29787859 - 29787895
Alignment:
| Q |
122 |
atgcatttccagaaataccgaaaacaatgttttcaaa |
158 |
Q |
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| T |
29787859 |
atgcatttctagaaataccgaaaacaatgctttcaaa |
29787895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 593
Target Start/End: Original strand, 3476362 - 3476555
Alignment:
| Q |
400 |
cactttgaggttgaacaacaagtgaatgg-ctatttcttgaatttcttcggattcaatggaacagctggtgtttggaggataaaggctttggaggaatca |
498 |
Q |
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| T |
3476362 |
cactttgaggttgaacagcaggtgaatggtatctttattg-atttctttggtttcaatggaactgctggtgtctggagaataaaggccctagaggagagt |
3476460 |
T |
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| Q |
499 |
ggcggttggttggagaggacgacagttgaggacatggacatagctgttagagctcatttgaatggatggaaattcatatatcttaatgatgttaa |
593 |
Q |
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| T |
3476461 |
ggcggctggttagagcgaacaactgttgaggacatggacattgctgttcgtgctcatctatgtggatggaagtttatttttctcaatgatgttaa |
3476555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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