View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595-Insertion-7 (Length: 645)
Name: NF5595-Insertion-7
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Original strand, 10982579 - 10983075
Alignment:
| Q |
11 |
agaacaaaggttgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggg |
110 |
Q |
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| T |
10982579 |
agaacaaaggctgaacaaggtgattttggttgaggagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggg |
10982678 |
T |
|
| Q |
111 |
gatcgaattaaggaattaatggactccgataaagggaaagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtg |
210 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10982679 |
gatcaaattaaggaattaatggactccgataaggggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtg |
10982778 |
T |
|
| Q |
211 |
gaagttcccttgtcgctttgaataagttggctaagttgtggaagcagaattagaagtaacataatataacttttttatatgatgtgggttttgttggccc |
310 |
Q |
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| T |
10982779 |
gaagttcccttgtcgctttgaataagttggctcagttgtggaagcagaattagaagtaacataatataac-tttttatatgatatgggttttgttggccc |
10982877 |
T |
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| Q |
311 |
ttatcataagttgttttgttgtctcataaaataaaatttatgaataaaatggtgttgaaattgtgattcggataaattgggctcctttaatttatttgtt |
410 |
Q |
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| T |
10982878 |
ttatcataagttgttttgttgtctcataaaataaaatttatgaataaaatggtggtgaaattgtgattcggataaattgggctcctttaatttatttgtt |
10982977 |
T |
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| Q |
411 |
tttgtaataaataggtggtttaattcataaatatttgcacaattatccttttctacacaaattattttaaaagtgctcagcgatactatttctttatg |
508 |
Q |
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| T |
10982978 |
tttgtaataaataggtggtttaattcataaatatttgcacaattatccttttccatacaaattattttaaaagtgctcagcgatactatttctttatg |
10983075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 10968629 - 10968877
Alignment:
| Q |
11 |
agaacaaaggttgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggg |
110 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968629 |
agaacaaaggctgaacaaggtgattttggttgacgagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggg |
10968728 |
T |
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| Q |
111 |
gatcgaattaaggaattaatggactccgataaagggaaagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtg |
210 |
Q |
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| T |
10968729 |
gatcgaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtg |
10968828 |
T |
|
| Q |
211 |
gaagttcccttgtcgctttgaataagttggctaagttgtggaagcagaa |
259 |
Q |
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| T |
10968829 |
gaagttcacttgttgctttgaataatctggcacagttgtggaagcagaa |
10968877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 11002809 - 11003010
Alignment:
| Q |
11 |
agaacaaaggttgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggg |
110 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| || | |||||| | |||||||||||||||| ||||| ||| |
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| T |
11002809 |
agaacaaaggttgaacaaaatgattttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggg |
11002908 |
T |
|
| Q |
111 |
gatcgaattaaggaattaatggactccgataaagggaaagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtg |
210 |
Q |
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| T |
11002909 |
gagagagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaaaaggaggaggtg |
11003008 |
T |
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| Q |
211 |
ga |
212 |
Q |
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|| |
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| T |
11003009 |
ga |
11003010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 11079996 - 11080177
Alignment:
| Q |
57 |
gctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagatta |
156 |
Q |
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||||||||| |||| || |||||||| ||||||||||||| || ||||| ||||| || ||||||| || ||||| || || || ||||||||| ||| |
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| T |
11079996 |
gctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggtta |
11080095 |
T |
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| Q |
157 |
gacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtggaagttcccttgtcgctttgaataagtt |
238 |
Q |
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| T |
11080096 |
gagagacaattttgaagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaaaagtt |
11080177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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