View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595-Insertion-8 (Length: 615)
Name: NF5595-Insertion-8
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595-Insertion-8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 112 - 615
Target Start/End: Complemental strand, 16686494 - 16685991
Alignment:
| Q |
112 |
gggatctctcactgttttgtaatctattgtttagatcttactgagtttgaactttttgtttaactgttatgacagtgacaggaccaagaaattgaagttg |
211 |
Q |
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| T |
16686494 |
gggatctcacactgttttgtaatctattgtttagatcttactgagtttgaactttttgtttaactgttatgacagtgacaggaccaagaaattgaagttg |
16686395 |
T |
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| Q |
212 |
gatcaatgtataaaggaacagcatctagattattaattttcctgttcttgttgggtgtatcagcaactgttaatggattttctaaatgcaactgtgacga |
311 |
Q |
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| T |
16686394 |
gatcaatgtataaaggaacagcatctagattcttaattttcctgttcttgttgggtgtatcagcaactgttaatggattttctaaatgcaactgtgacga |
16686295 |
T |
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| Q |
312 |
tgacacgagctggtggacgattgagaagattctagaatggcagaaagtcggtgattttctgatcgcggtggcatacttctcgatccctattgagcttctt |
411 |
Q |
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| T |
16686294 |
tgacacgagctggtggacgattgagaagattctagaatggcagaaagtcggtgattttctgatcgcggtggcatacttctcgatccctattgagcttctt |
16686195 |
T |
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| Q |
412 |
tatttcatcagttgtgcaaacattccattcaaatgggtactttttcagttcattgctttcattgtactttgtggaatgacacatttgtttaatagctgga |
511 |
Q |
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| T |
16686194 |
tatttcatcagttgtgcaaacattccattcaaatgggtactttttcagttcattgctttcattgtactttgtggaatgacacatttgtttaatagctgga |
16686095 |
T |
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| Q |
512 |
cttatggaccccacacatttcaaatcatgctgacacttactgtcttgaaagtcctcactgcattggtttcatgtgcaactaccataaccctcatcacttt |
611 |
Q |
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| T |
16686094 |
cttatggaccccacacatttcaaatcatgctgacacttactgtcttgaaagtcctcactgcattggtttcatgtgcaactaccataaccctcatcacttt |
16685995 |
T |
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| Q |
612 |
gatc |
615 |
Q |
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| T |
16685994 |
gatc |
16685991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 16686599 - 16686528
Alignment:
| Q |
7 |
aagaggaatagtttggatcattttatttgggtaaagaattataggtttcatgtgcctttctctttcaggaag |
78 |
Q |
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| T |
16686599 |
aagaggaatagttttgatcattttatttgggtaaagaattataggtttcatgtgcctttctctttcaggaag |
16686528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 361 - 614
Target Start/End: Original strand, 32788846 - 32789099
Alignment:
| Q |
361 |
ggtgattttctgatcgcggtggcatacttctcgatccctattgagcttctttatttcatcagttgtgcaaacattccattcaaatgggtactttttcagt |
460 |
Q |
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| T |
32788846 |
ggtgatttcttgattgctgtggcctacttctcaatccctcttgagctgctttattttgtcagttgctcgaacgtccctttcaaatgggtccttgttcagt |
32788945 |
T |
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| Q |
461 |
tcattgctttcattgtactttgtggaatgacacatttgtttaatagctggacttatggaccccacacatttcaaatcatgctgacacttactgtcttgaa |
560 |
Q |
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| T |
32788946 |
tcattgcttttatagtactatgtggattgacacattttttgaatggttggacttatggtcctcacacttttcagcttatggtggcacttaccatctttaa |
32789045 |
T |
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| Q |
561 |
agtcctcactgcattggtttcatgtgcaactaccataaccctcatcactttgat |
614 |
Q |
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| T |
32789046 |
gattctcaccgccttggtgtcttgtgcaactgcgataacacttgtcactttgat |
32789099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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