View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595-Insertion-9 (Length: 587)
Name: NF5595-Insertion-9
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 26764858 - 26764386
Alignment:
| Q |
8 |
ccttcttcgtctaccacctgacggattattggatcttctccttcgtcctccggcgtggagaatgccgagacggagaagatgaaaagaacgacgaagagaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26764858 |
ccttcttcgtctaccacctgacggattattggatcttctccttcgtcg---ggcgtggagaatgccgagacggagaagatgaaaagaacgacgaagagaa |
26764762 |
T |
|
| Q |
108 |
gaagagtgcgatgatccatgaaatgaggataggatatagaaaatcgcagaatagaataaggaaaggtgtgagtttctattatatagaggttgcacttgcg |
207 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26764761 |
gaagagtgcgatgatccatgacttgaggataggatatagaaaatcgcagaatagaataaggaaaggtgtgagtttctattatatagaggttgcacttgcg |
26764662 |
T |
|
| Q |
208 |
gtacgtaaggaattnnnnnnnnnnnnnnngattaagattgaattgagtacgcgctatcgattacttaggagagaggtaaggtttggtaacaaatagataa |
307 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26764661 |
gtacgtaaggaattaaaaaaagtaaaaaagattaagattgaattgagtacgcgctatcgattacttaggagagaggtaaggtttggtaacaaatagataa |
26764562 |
T |
|
| Q |
308 |
atgacacgtgggttttgttcgttcaaatttgaatgacggttataagaaactgatagttaggattttcctttactgttaggttagaaaattgctttcccaa |
407 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26764561 |
atgacacgtgggttttgttcgttcaaatttgaatgacggttataagaaactgatagttaggattttcctttactgttaggttagaaaattgctttcccaa |
26764462 |
T |
|
| Q |
408 |
tcaaaattgctcattcccacatataactagcgcaaataacaacaaacgtgctaagaggtataaattgaggattttg |
483 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26764461 |
tcaaaattgctcattctcacatataactagcgaaaataacaacaaacgtgttaagaggtataaattgaggattttg |
26764386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 482 - 587
Target Start/End: Complemental strand, 26764304 - 26764199
Alignment:
| Q |
482 |
tggaccactataaacaacaatcagatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccatctcgcctct |
581 |
Q |
| |
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||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
26764304 |
tggaccactataaacaacaattagattaatcaagttaacatatcctattatacactacatacactagattacccctctatatatttactatctcgtctct |
26764205 |
T |
|
| Q |
582 |
tatgtc |
587 |
Q |
| |
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|||||| |
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|
| T |
26764204 |
tatgtc |
26764199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 32138813 - 32138743
Alignment:
| Q |
504 |
agatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccatct |
574 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32138813 |
agattaatcaagttcacatatcctattctacactatatatactagattacccctctatatatttaccatct |
32138743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 504 - 571
Target Start/End: Original strand, 48135969 - 48136036
Alignment:
| Q |
504 |
agatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttacca |
571 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||| | ||||||| |||||||||||||||||| |
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|
| T |
48135969 |
agattaatcaagtccacatatcctattctacattacatatattagattatccctctatatatttacca |
48136036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 509 - 572
Target Start/End: Original strand, 19763506 - 19763569
Alignment:
| Q |
509 |
aatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccat |
572 |
Q |
| |
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||||||||||||||||| |||| ||||||||||| ||||||||| | ||||||||||||||||| |
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|
| T |
19763506 |
aatcaagtccacatatcatattctacactacatatactagattatcgctctatatatttaccat |
19763569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 20776081 - 20776126
Alignment:
| Q |
504 |
agatcaatcaagtccacatatcctattatacactacatacactaga |
549 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
20776081 |
agattaatcaagtccacatattctattctacactacatatactaga |
20776126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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