View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_10 (Length: 489)
Name: NF5595_high_10
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 5809736 - 5810195
Alignment:
| Q |
11 |
acatcatcacgtgattaaaatatgcatgcacctataaataagagaaaaagcaacctgctagctatacagtataaccaaaaacgtttgaggaagcaaaatt |
110 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809736 |
acatcaacacgtgattaaaatatgcatacacctataaataagagaaaaagcaacctgctagctatacagtataaccaaaaacgtttgaggaagcaaaatc |
5809835 |
T |
|
| Q |
111 |
gacaagacaaattatgttaattctatcactagaaaacaacatatttgtacccaccaaagaaagaaacaaaataaaatgatgagatgaaatattataatgc |
210 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809836 |
gaccagacaaattatgttaattccatcactagaaaacaacatatttgtacccaccaaagaaagaaacaaaataaaatgatgagatgaaatattataatgc |
5809935 |
T |
|
| Q |
211 |
caagaaaacatgaaattattaatgaattggaatatggaaacatatcattttttgtgttttctcaac-aaaaataaaataaaattctattcaacatgattt |
309 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
5809936 |
caagaaaacatgaaattattaatgcattggaaaatggaaacatatcattttttgtgttttctcaacaaaaaaaaaaaaaaaattctattcaacatgattt |
5810035 |
T |
|
| Q |
310 |
ctgggttcctaacaatttctcacaagacataccccccaatataagaaattatacttatttatgtatggaagcgagacttaatagccctgaatatttttta |
409 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810036 |
ctgggttcctaacaatttctcacaagacata-cccccaatataagaaattatacttatttatgtatggaagcgagacttaatagccctgaatatttttta |
5810134 |
T |
|
| Q |
410 |
taggatgggaaaaatatttgaaaagcaagaggagatataaacaactagagggaaaataagt |
470 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5810135 |
taggatgggaaaaatatttaaaaagcaagaggagatataaacaacgagagggaaaataagt |
5810195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 446
Target Start/End: Original strand, 37739544 - 37739650
Alignment:
| Q |
344 |
cccaatataagaaattatacttatttat----gtatggaagcgagacttaatagccctgaatattttttataggatgggaaaaatatttgaaaagcaaga |
439 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||| | ||||| || ||||| ||||||||||||| | ||||||||||||||||||||||| |
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| T |
37739544 |
cccaatataaaaaattatacttttttatatatgtatggaagcaaaacttactaaccctggatattttttatagcaaaggaaaaatatttgaaaagcaaga |
37739643 |
T |
|
| Q |
440 |
ggagata |
446 |
Q |
| |
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||||||| |
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| T |
37739644 |
ggagata |
37739650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 446
Target Start/End: Original strand, 37755438 - 37755546
Alignment:
| Q |
343 |
ccccaatataagaaattatacttatttatgtatg----gaagcgagacttaatagccctgaatatttttt-ataggatgggaaaaatatttgaaaagcaa |
437 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||||| | ||||| || ||||| ||||||||| |||| | ||||||||||||||||||||| |
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| T |
37755438 |
ccccaatataaaaaattatacttttttatgtatgtatggaagcaaaacttactaaccctggatatttttttatagcaaaggaaaaatatttgaaaagcaa |
37755537 |
T |
|
| Q |
438 |
gaggagata |
446 |
Q |
| |
|
|| |||||| |
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|
| T |
37755538 |
gacgagata |
37755546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 446
Target Start/End: Original strand, 37761412 - 37761520
Alignment:
| Q |
343 |
ccccaatataagaaattatacttatttatgtatg----gaagcgagacttaatagccctgaatatttttt-ataggatgggaaaaatatttgaaaagcaa |
437 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||||| | ||||| || ||||| ||||||||| |||| | ||||||||||||||||||||| |
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| T |
37761412 |
ccccaatataaaaaattatacttttttatgtatgtatggaagcaaaacttactaaccctggatatttttttatagcaaaggaaaaatatttgaaaagcaa |
37761511 |
T |
|
| Q |
438 |
gaggagata |
446 |
Q |
| |
|
|| |||||| |
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|
| T |
37761512 |
gacgagata |
37761520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 37755319 - 37755376
Alignment:
| Q |
196 |
gaaatattataatgccaagaaaacatgaaattattaatgaattggaatatggaaacat |
253 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| | || ||||||| |||||||||| |
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|
| T |
37755319 |
gaaatattataatgccaaggaaaaatgaaattatgactgcattggaaaatggaaacat |
37755376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 37761293 - 37761350
Alignment:
| Q |
196 |
gaaatattataatgccaagaaaacatgaaattattaatgaattggaatatggaaacat |
253 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| | || ||||||| |||||||||| |
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|
| T |
37761293 |
gaaatattataatgccaaggaaaaatgaaattatgactgcattggaaaatggaaacat |
37761350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 37739367 - 37739410
Alignment:
| Q |
124 |
atgttaattctatcactagaaaacaacatatttgtacccaccaa |
167 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
37739367 |
atgttaattccatcactaaaaaacaacatatttgcacccaccaa |
37739410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 37755269 - 37755312
Alignment:
| Q |
124 |
atgttaattctatcactagaaaacaacatatttgtacccaccaa |
167 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
37755269 |
atgttaattccatcactaaaaaacaacatatttgcacccaccaa |
37755312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 37761243 - 37761286
Alignment:
| Q |
124 |
atgttaattctatcactagaaaacaacatatttgtacccaccaa |
167 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
37761243 |
atgttaattccatcactaaaaaacaacatatttgcacccaccaa |
37761286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 38605479 - 38605424
Alignment:
| Q |
198 |
aatattataatgccaagaaaacatgaaattattaatgaattggaatatggaaacat |
253 |
Q |
| |
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||||||||||||||||| |||||||||||||| || ||||||| |||||||||| |
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|
| T |
38605479 |
aatattataatgccaaggaaacatgaaattatgtttgcattggaaaatggaaacat |
38605424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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