View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_12 (Length: 479)
Name: NF5595_high_12
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Complemental strand, 43533424 - 43532970
Alignment:
| Q |
14 |
gtttcttcatgatcatcatcatcctttgagcatttaaccattgcagcaaagaaaggatcatccctttgaattgaattcttcttcctaatcttggtatctt |
113 |
Q |
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| T |
43533424 |
gtttcttcatgatcatcatcatcctttgagcatttaaccattgcagcaaagaaaggatcatccctttgaattgaattcttcttcctaatcttggtatctt |
43533325 |
T |
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| Q |
114 |
catgattaagctttttagaagagtgtgtggtagtacttgtagtaatagtaggagggggtaatggtaatagtttcatggatgatttatgatttttcttgga |
213 |
Q |
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| T |
43533324 |
catgattaagctttttagaagagtgtgtggtagtacttgtagtaatagtaggagggggtaatggtaatagtttcatggatgatttatgatttttcttgga |
43533225 |
T |
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| Q |
214 |
attattgtgtttcttgggaattccaggtaaatgttcccaagaaaatgggacacctgagaatctaagtggagtggcagggcttagaagaggatcatcaaga |
313 |
Q |
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| T |
43533224 |
attattgtgtttcttgggaattccaggtaaatgttcccaagaaaatgggacacctgagaatctaagtggagtggcagggcttagaagaggatcatcaaga |
43533125 |
T |
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| Q |
314 |
aaatagaatgattcaagggaagaagatgaaggtgaaagtgatgatgaataagaggagaatgaagcggttcggcgagaagatggatacttaccaggaagga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43533124 |
aaatagaatgattcaagggaagaagatgaaggtgaaagtgatgatgaataagaggagaatgaagcggttcggcgagaagatggatacttaccgggaagga |
43533025 |
T |
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| Q |
414 |
aggtttcacattgtgttggaacatccttggcatgatgtctgagatttggtgatga |
468 |
Q |
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| T |
43533024 |
aggtttcacattgtgttggaacatccttggcatgatgtctgagatttggtgatga |
43532970 |
T |
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