View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_14 (Length: 441)
Name: NF5595_high_14
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 42224309 - 42223887
Alignment:
| Q |
1 |
cggctcaggttgtgtgattgagatcatatatgtcacgctcttcttgatttactctgatggcaacaaaaggctcaaggtccttatgtggctagttgttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224309 |
cggctcaggttgtgtgattgagatcatatatgtcacgctcttcttgatttactctgatggcaacaaaaggctcaaggtccttatgtggctagttgttgaa |
42224210 |
T |
|
| Q |
101 |
cttgttttcatcgcagctcttacatttgtcacgttgagccttgttcacgacgtcacgaaacgctctgccattgttggtacgacatgcattgtcttcaaca |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224209 |
ctcgttttcatcgcagctcttacatttgtcacgttgagccttgttcacgacgtcgcgaaacgctctgccattgttggtacgacatgcattgtcttcaaca |
42224110 |
T |
|
| Q |
201 |
ttatgatgtatgttgcacctttagctgtgatggtatgtaatcatcaaacaaacacttaatcttaattttttgtttggaagcgtttttattgaatttgaag |
300 |
Q |
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| T |
42224109 |
ttatgatgtatgttgcacctttagctgtgatggtatgtaatcatcaaacaaacacttaatcttaatttttggtttggatgcgtttttattgaatttgaag |
42224010 |
T |
|
| Q |
301 |
tatttgataaaatttactattgctttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatg |
400 |
Q |
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| T |
42224009 |
tatttgataaaatttactattgctttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatg |
42223910 |
T |
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| Q |
401 |
gtgtggcttggacaacttactct |
423 |
Q |
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| T |
42223909 |
gtgtggcttggacaacttactct |
42223887 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 36675871 - 36675959
Alignment:
| Q |
325 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
413 |
Q |
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||||||||||| ||||||| ||||||||| |||||| ||||||| | | | ||||| | ||||| ||||| |||||||| ||||||| |
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| T |
36675871 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36675959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 36685953 - 36686041
Alignment:
| Q |
325 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
413 |
Q |
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||||||||||| ||||||| ||||||||| |||||| ||||||| | | | ||||| | ||||| ||||| |||||||| ||||||| |
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| T |
36685953 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36686041 |
T |
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