View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_18 (Length: 415)
Name: NF5595_high_18
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 35448993 - 35449392
Alignment:
| Q |
1 |
ttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448993 |
ttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccat |
35449092 |
T |
|
| Q |
101 |
acgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcatcagtaccaaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35449093 |
acgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcatcaataccaaacatg |
35449192 |
T |
|
| Q |
201 |
cgagtagaagaacttggatattcaggttctgatatggctgttccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35449193 |
cgagtagaagaacttggatattcaggttctgatatggctattccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttg |
35449292 |
T |
|
| Q |
301 |
aacaatctccctgagcagacacgtcaaccataccaaacaatgatccaccattattcaactcataagataaattggattcccacccatgttgcatattttt |
400 |
Q |
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| T |
35449293 |
aacaatctccttgagcagacacgtcaaccataccaaacgatgatccaccattattcaactcataagataaattggattcccacccatgttgcatattttt |
35449392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 333
Target Start/End: Original strand, 35448766 - 35449094
Alignment:
| Q |
2 |
tatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccata |
101 |
Q |
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| T |
35448766 |
tatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccata |
35448865 |
T |
|
| Q |
102 |
cgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcatcagtaccaaacatgc |
201 |
Q |
| |
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|||||| ||||||| || ||| || |||||||| ||||||||| ||| | |||||||||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
35448866 |
tgaaatgatgatcca---ccattactatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaacatgc |
35448962 |
T |
|
| Q |
202 |
gagtagaagaacttggatattcaggttctgatatggctgttccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttga |
301 |
Q |
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|| |||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |
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| T |
35448963 |
taggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttga |
35449062 |
T |
|
| Q |
302 |
acaatctccctgagcagacacgtcaaccatac |
333 |
Q |
| |
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| ||||||| |||||||||| |||||||||| |
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| T |
35449063 |
aaaatctccatgagcagacatatcaaccatac |
35449094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 35440974 - 35441087
Alignment:
| Q |
2 |
tatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccata |
101 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| | ||||||||| ||||||||| || || |||||||| || |||||||||||||||| ||||||||||| |
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| T |
35440974 |
tatggtcattcccccattaactccttgttgcatacccatgtttgagttctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccata |
35441073 |
T |
|
| Q |
102 |
cgaaatggtgatcc |
115 |
Q |
| |
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| T |
35441074 |
ccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 35454520 - 35454565
Alignment:
| Q |
63 |
atgcttgaaaaatctccatgagcagacatatcaaccatacgaaatg |
108 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||| ||||| |
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| T |
35454520 |
atgcttgaaatatctccatgagcagacttatcaaccataccaaatg |
35454565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 346
Target Start/End: Original strand, 35440925 - 35441087
Alignment:
| Q |
184 |
catcagtaccaaacatgcgagtagaagaacttggatattcaggttctgatatggctgttccctcattaattccttgttgaaagcccatgttcgtgttctg |
283 |
Q |
| |
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|||||| |||||||||| ||| |||| |||||| || ||||||| ||||||| ||||| |||||| ||||||||| | |||||||| | |||||| |
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| T |
35440925 |
catcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagttctg |
35441024 |
T |
|
| Q |
284 |
actataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaatgatcc |
346 |
Q |
| |
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| || || |||| ||| | |||||| ||||||||| |||||||||||||| ||||||| |
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| T |
35441025 |
agtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 35448780 - 35448886
Alignment:
| Q |
247 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaatgatcc |
346 |
Q |
| |
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|||||| |||||| || || ||||||| | ||||||||||| ||||||| || || |||||| |||||||||| ||||||||| ||| ||||||| |
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| T |
35448780 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatatgaaatgatgatcc |
35448879 |
T |
|
| Q |
347 |
accatta |
353 |
Q |
| |
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||||||| |
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| T |
35448880 |
accatta |
35448886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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