View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5595_high_19 (Length: 405)

Name: NF5595_high_19
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5595_high_19
NF5595_high_19
[»] chr1 (4 HSPs)
chr1 (11-405)||(34593787-34594181)
chr1 (14-101)||(34578391-34578478)
chr1 (206-285)||(34578117-34578196)
chr1 (335-405)||(34577953-34578023)
[»] chr6 (9 HSPs)
chr6 (11-103)||(32601041-32601133)
chr6 (11-103)||(32590570-32590662)
chr6 (200-285)||(32590357-32590442)
chr6 (335-405)||(32590193-32590263)
chr6 (335-405)||(32600641-32600711)
chr6 (205-285)||(32600805-32600885)
chr6 (339-405)||(24883687-24883753)
chr6 (47-106)||(24883380-24883439)
chr6 (233-276)||(24883552-24883595)
[»] chr7 (2 HSPs)
chr7 (339-377)||(27526724-27526762)
chr7 (339-377)||(27532378-27532416)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 34594181 - 34593787
Alignment:
Q  11 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaaggaatca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34594181 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaaggaatca 34594082  T
Q  111 atggaaaaaacagaaactcactatattgatatgtattgttcaattactttgcttcattttccatattgtgatcaaaattattttactttctccctagcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34594081 atggaaaaaacagaaactcactatattgatatgtattgttcaattactttgcttcattttccatattgtgatcaaaattattttactttctccctagcat 34593982  T
Q  211 gacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaacaattgcaatttagagaatattgcac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593981 gacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaacaattgcaatttagagaatattgcac 34593882  T
Q  311 tcagaaattaattgcttcttgaattattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34593881 tcagaaattaattgcttcttgaattattagatcctgacatgcttgaggttgggaatggaggcatgactacagaagaatatcgttcacatttcagc 34593787  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 34578478 - 34578391
Alignment:
Q  14 aggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt 101  Q
    |||||||||||||| || ||||| ||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||    
T  34578478 aggggatgggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattggaagaggt 34578391  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 34578196 - 34578117
Alignment:
Q  206 agcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac 285  Q
    ||||||||||||||   |||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34578196 agcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaac 34578117  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 34578023 - 34577953
Alignment:
Q  335 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagc 405  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| | |||||||||    
T  34578023 tattagatcctgatatgcttgaagttggaaatggaggcatgaccacagaggaatatcgtgcccatttcagc 34577953  T

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Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 32601133 - 32601041
Alignment:
Q  11 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa 103  Q
    ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  32601133 cataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaa 32601041  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 32590662 - 32590570
Alignment:
Q  11 cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa 103  Q
    |||||||||  |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  32590662 cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaa 32590570  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 32590442 - 32590357
Alignment:
Q  200 ctccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac 285  Q
    |||||||| ||||||||||||  ||||  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32590442 ctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaattaattaac 32590357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 32590263 - 32590193
Alignment:
Q  335 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagc 405  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  32590263 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagc 32590193  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 32600711 - 32600641
Alignment:
Q  335 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagc 405  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  32600711 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagc 32600641  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 32600885 - 32600805
Alignment:
Q  205 tagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac 285  Q
    ||||||||||||||||  ||||  |||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32600885 tagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaac 32600805  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 24883687 - 24883753
Alignment:
Q  339 agatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagc 405  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | |||||||||    
T  24883687 agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatatcgtgcccatttcagc 24883753  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 24883380 - 24883439
Alignment:
Q  47 agtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaagga 106  Q
    |||||||||||||||||||||||||||   ||||| |||||||| ||| |||||| ||||    
T  24883380 agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggtgagga 24883439  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 24883552 - 24883595
Alignment:
Q  233 aataaatgggcatcgtatgctggacctggaggatggaatggtaa 276  Q
    ||||||||||| || || ||||||||||||||||||||||||||    
T  24883552 aataaatgggcttcttacgctggacctggaggatggaatggtaa 24883595  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 27526724 - 27526762
Alignment:
Q  339 agatcctgacatgcttgaggttggaaatggaggcatgac 377  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27526724 agatcctgacatgcttgaggttggaaatggagggatgac 27526762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 27532378 - 27532416
Alignment:
Q  339 agatcctgacatgcttgaggttggaaatggaggcatgac 377  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  27532378 agatcctgatatgcttgaggttggaaatggagggatgac 27532416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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