View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5595_high_27 (Length: 333)

Name: NF5595_high_27
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5595_high_27
NF5595_high_27
[»] chr6 (3 HSPs)
chr6 (47-126)||(9928083-9928172)
chr6 (267-317)||(13561978-13562028)
chr6 (57-92)||(27439180-27439215)
[»] chr5 (3 HSPs)
chr5 (267-317)||(38603085-38603135)
chr5 (51-92)||(38473221-38473262)
chr5 (268-317)||(39051040-39051089)
[»] chr2 (2 HSPs)
chr2 (267-306)||(38593744-38593783)
chr2 (267-306)||(38597340-38597379)
[»] scaffold0003 (1 HSPs)
scaffold0003 (57-92)||(48147-48182)


Alignment Details
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 9928172 - 9928083
Alignment:
Q  47 tctcatcactacacctccaatttcttaaatccagaaatcatcaaca----------tcaacatgatgatgatgatcatcaatttcttcat 126  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  9928172 tctcgtcactacacctccaatttctaaaattcagaaatcatcaacaacaatcaacatcaacatgatgatgatcatcatcaatttcttcat 9928083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 13562028 - 13561978
Alignment:
Q  267 tttgcgacccaccgtttcaaactcgtccattctgtccgaacccattcattt 317  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  13562028 tttgcgacccaccgtttcaaacccgtccattctgtccgaagccattaattt 13561978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 27439180 - 27439215
Alignment:
Q  57 acacctccaatttcttaaatccagaaatcatcaaca 92  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27439180 acacctccaatttcttaaatccagaaatcgtcaaca 27439215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 38603085 - 38603135
Alignment:
Q  267 tttgcgacccaccgtttcaaactcgtccattctgtccgaacccattcattt 317  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  38603085 tttgcgacccaccgtttcaaagtcgtccattctgtccgaagccattgattt 38603135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 38473262 - 38473221
Alignment:
Q  51 atcactacacctccaatttcttaaatccagaaatcatcaaca 92  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  38473262 atcactacacctccaattttttaaatccagaaatcatcaaca 38473221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 39051040 - 39051089
Alignment:
Q  268 ttgcgacccaccgtttcaaactcgtccattctgtccgaacccattcattt 317  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  39051040 ttgcgacccaccgtttcaaacccgtccattctgtccgaagccattgattt 39051089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 38593783 - 38593744
Alignment:
Q  267 tttgcgacccaccgtttcaaactcgtccattctgtccgaa 306  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  38593783 tttgcgacccaccgtttcaaacccgtccattctgtccgaa 38593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 38597379 - 38597340
Alignment:
Q  267 tttgcgacccaccgtttcaaactcgtccattctgtccgaa 306  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  38597379 tttgcgacccaccgtttcaaacccgtccattctgtccgaa 38597340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 48182 - 48147
Alignment:
Q  57 acacctccaatttcttaaatccagaaatcatcaaca 92  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48182 acacctccaatttcttaaatccagaaatcgtcaaca 48147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University