View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_35 (Length: 295)
Name: NF5595_high_35
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 43051016 - 43051301
Alignment:
| Q |
1 |
tagcaaaaatagatttctttcaagtatgcaagagttagaaagaatggtgca-------catcattcttcattttaggtaacaagcaaaatacatatattt |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43051016 |
tagcaaaaatagatttctttcaagtatgcaagagttagaaagaatggtgaatggtgcgcatcattcttcattttaggtaacaagcaaaatacacatattt |
43051115 |
T |
|
| Q |
94 |
ttct-ttattattgagtaatagtcatgttgatgatctataatctatttcgggagagagataagaataggaatagtaaatagagagagtagttagttgagt |
192 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051116 |
ttttattattattgagtaatagtcatgttgatgatctataatctatttcgggagagagataagaataggaatagtaaatagagagagtagttagttgagt |
43051215 |
T |
|
| Q |
193 |
cctaaaatgaaggagaaggtaaatgagtggcaacaattgaatggaggtaaagcgtgcatcatcactcacccatcatccaattccat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051216 |
cctaaaatgaaggagaaggtaaatgagtggcaacaattgaatggaggtaaagcgtgcatcatcactcacccatcatccaattccat |
43051301 |
T |
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